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Publications

Peer-reviewed publications by Samuel M. Jenness on infectious disease modeling, HIV and STI prevention, network epidemiology, and the EpiModel platform.

131 peer-reviewed publications, 2009 to 2026. Filter by research area or year, or search by title, author, or journal. Every entry links out to PubMed and the publisher, and exports as BibTeX or RIS in one click.

External profiles: PubMed · Google Scholar · ORCID · CV (PDF)

2026

  1. 131

    Enhanced Screening and Bacterial Sexually Transmitted Infection Diagnoses after HIV Pre-Exposure Prophylaxis InitiationIn press

    Parker AM, Jenness SM, Singer BJ, Chang JJ, Bruxvoort KJ, Lewnard JA

    Epidemiology

  2. 130

    PrEP Reinitiation, Uptake, and Persistence as Targets for Reducing HIV Incidence and Racial and Ethnic Inequities among Men Who Have Sex with Men in Boston, USA: A Network Modeling Study

    Chandra C, Marcus JL, Jones J, Crawford ND, Galvin HK, Mayer KH, Sinha P, Le Guillou A, Jenness SM

    Lancet Regional Health – Americas; 63: 101620

    JournalPubMed

  3. 129

    Modeling the Potential Impact of Scaling Up Event-Driven PrEP among Gay, Bisexual, and Other Men Who Have Sex with MenOnline first

    Chandra C, Maloney KM, Le Guillou A, Hoover KW, Jenness SM

    Journal of Acquired Immune Deficiency Syndromes

    JournalPubMed

  4. 128

    Evolving Drivers of Pre-Exposure Prophylaxis Discontinuation among United States Men Who Have Sex with Men, 2018–2024Online first

    Jenness SM, Manuelpillai B, Goodreau SM, Marcus JL, Enns EA, Lucas IL, Acero Martinez C, Siegler AJ, Sanchez T

    AIDS

    JournalPubMed

  5. 127

    Modeling the Impact of U.S. Isolation and Masking Guidance on SARS-CoV-2 Transmission in Office Workplaces in 2021–2022Online first

    Quesada MG, Wallrafen-Sam K, Kiti MC, Ahmed F, Aguolu OG, Ahmed N, Omer SB, Lopman BA, Jenness SM

    Epidemics

    JournalPubMed

  6. 126

    Potential Risks and Benefits of Low-Barrier Access and Monitoring for HIV Preexposure Prophylaxis: A Modeling StudyOnline first

    Le Guillou A, Marcus JL, Krakower DS, Violette LR, Jenness SM

    Journal of Infectious Diseases

    JournalPubMed

  7. 125

    Evaluating Mental Health Integration in PrEP Programs to Reduce HIV Incidence among US Gay and Bisexual Men: A Network Modeling StudyOnline first

    Onwubiko UN, Le Guillou A, Chamberlain AT, Benkeser D, Holland DP, Baral SD, Jenness SM

    BMC Health Services Research

    JournalPubMed

  8. 124

    Visualizing Stigma and HIV Service Engagement: A Participatory Approach Using Causal Loop DiagramsOnline first

    Chen M, Baral S, Murray SM, Jenness SM, Lucas IL, Sanchez T, Atkins K, Lyons C, Yu Y, Alicea-Jorgensen K, Robinson KC, Igusa T, Rao A

    BMC Public Health

    JournalPubMed

  9. 123

    Temporal Connectivity of Social Contact Networks in Urban and Rural IndiaOnline first

    Chen D, Prasanna S, Srinivasan R, Le Guillou A, Raghava V, Omer SB, Lopman BA, Jenness SM

    Epidemiology

    JournalPubMed

  10. 122

    Predictive Models to Identify Factors Associated with a High One-Time Sexual Partnership Rate Among U.S. Men Who Have Sex with MenOnline first

    Anderson EJ, Gandhi NR, Sanchez TH, Enns EA, Jenness SM

    AIDS & Behavior

    JournalPubMed

  11. 121

    Long-Acting Injectable Cabotegravir HIV PrEP Uptake, Adherence, and Persistence in Two Large US Integrated Healthcare Systems

    Traeger MW, Leyden WA, Eberhart LG, Volk JE, Silverberg MJ, Horberg MA, Davis TL, Mayer KH, Krakower DS, Young JG, Jenness SM, Marcus JL

    Journal of Acquired Immune Deficiency Syndromes; 101(8): 812–818

    JournalPubMed

  12. 120

    Role of Casual Contact in Drug-Resistant Tuberculosis Transmission: A Molecular Epidemiology Study

    Gandhi NR, Naidoo K, Lutchminarain K, Omar SV, Yoshii H, Willis F, Boodhram R, Gwala T, Campbell A, Coe MM, Evans AN, Tang L, Chitwood MH, Hlathi SR, Mbatha PN, Joseph L, Van Der Meulen H, Mlisana K, Jenness SM, Lurie MN, Kreiswirth BN, Warren JL, Nelson KN, Auld SC, Brust JCM, Cohen T, Mathema B, Shah NS

    American Journal of Respiratory and Critical Care Medicine; 212(7): 1585–1595

    JournalPubMed

  13. 118

    The Application of Social Network Analysis to Examine COVID-19 Contact Tracing Networks in a University Setting

    Harrington KR, Jenness SM, Siira M, Rothschild E, Graham T, Rabinovitz S, Shartar S, Crubezy M, Clark D, Isakov A, Chamberlain A, Cegielski JP, Andrews JR, Waller LA, Auld SC, Gandhi NR

    Public Health; 252: 106171

    JournalPubMed

2025

  1. 119

    Randomized Controlled Trial of a HIV Prevention App to Increase Pre-Exposure Prophylaxis Uptake among Gay and Bisexual Men Who Have Sex with Men in the United States: The HealthMindr PrEP Study

    Jones J, Schneider I, Valencia R, Jenness SM, Butler G, Castel AD, Kulie P, Stephenson R, Stekler JD, Mena L, Sullivan PS

    Journal of Acquired Immune Deficiency Syndromes; 100(5): 424–434

    JournalPubMed

  2. 117

    Characterizing Social Behavior Relevant for Infectious Disease Transmission in Four Low- and Middle-Income Countries, 2021–2023

    Nelson KN, Kiti MC, Shiiba M, Sacoor C, Bardají A, Macicame I, Jamisse E, Tchavana C, José A, Cavele N, Maldonado H, Jarquin C, Ajsivinac HM, Samuel P, Srinivasan R, Kazi M, Allana R, Kim SS, Prasad PV, Chen D, Liu C, Jenness SM, Ahmed N, Aguolu O, Sundaram MA, Yildirim I, Malik F, Melegaro A, Lopman BA, Omer SB

    Nature Communications; 16(1): 9586

    JournalPubMed

  3. 116

    Meta-Modeling as a Variance-Reduction Technique for Stochastic Model-Based Cost-Effectiveness Analyses

    Li Z, Knowlton GS, Wheatley MM, Jenness SM, Enns EA

    Medical Decision Making; 45(8): 976–986

    JournalPubMed

  4. 115

    Support for Over-the-Counter HIV Preexposure Prophylaxis Among Transfeminine People

    Violette LR, Jenness SM, Sanchez TH, Krakower DS, Marcus JL

    JAMA Network Open; 8(8): e2527800

    JournalPubMed

  5. 114

    Impact of Depression at HIV PrEP Initiation on Sustain PrEP Care Engagement among US Gay and Bisexual Men

    Onwubiko UN, Benkeser D, Holand DP, Baral SD, Marcus JL, Mayer KH, Herrick B, Sinha P, Chamberlain AT, Jenness SM

    Journal of Acquired Immune Deficiency Syndromes; 100(1): 57–65

    JournalPubMed

  6. 113

    Modelling the Interplay Between Responsive Individual Vaccination Decisions and the Spread of SARS-CoV-2

    Wallrafen-Sam K, Quesada MG, Lopman BA, Jenness SM

    Epidemics; 51: 100831

    JournalPubMed

  7. 112

    The Effect of COVID-19 Vaccination on Change in Contact and Implications for Transmission

    Liu CY, Siegler A, Sullivan P, Jenness SM, Flasche S, Lopman B, Nelson K

    Epidemics; 51: 100827

    JournalPubMed

  8. 111

    Interventions for SARS-CoV-2 Prevention among Jailed Adults: A Network-Based Modeling Analysis

    Schneider I, Wallrafen-Sam K, Kennedy S, Akiyama MJ, Spaulding AC, Jenness SM

    Infectious Disease Modeling; 10(2): 628–638

    JournalPubMed

  9. 110

    Social Mixing Patterns of United States Healthcare Personnel at a Quaternary Health Center: a Prospective Observational Study

    Pischel L, Aguolu OG, Ahmed N, Campbell MM, Borg R, Duckwall C, Willebrand K, Zaleski A, Paintsil EE, Muenker MC, Malik AA, Kiti MC, Warren JL, Jenness SM, Lopman BA, Belsky J, Martinello RA, Yildirim I, Ko AI, Omer SB

    Infect Control Hosp Epidemiology; 46(3): 1–9

    JournalPubMed

  10. 109

    Doxycycline Postexposure Prophylaxis and Bacterial Sexually Transmitted Infections Among Individuals Using HIV Preexposure Prophylaxis

    Traeger MW, Leyden WA, Volk JE, Silverberg MJ, Horberg MA, Davis TL, Mayer KH, Krakower DS, Young JG, Jenness SM, Marcus JL

    JAMA Internal Medicine; 185(3): 273–281

    JournalPubMed

  11. 108

    Optimizing HIV Partner Services for Gay, Bisexual and Other Men Who Have Sex with Men Previously Diagnosed with HIV: A Modeling Study

    Onwubiko UN, Le Guillou A, Lyles C, Maloney KM, Delaney KP, Jenness SM

    Sexually Transmitted Diseases; 52(8): 495–502

    JournalPubMed

  12. 107

    Social Contact Patterns in Rural and Urban Settings, Mozambique, 2021–2022

    Kiti MC, Sacoor C, Aguolu OG, Zelaya A, Chen H, Kim SS, Cavele N, Jamisse E, Tchavana C, Jose A, Macicame I, Joaquim O, Ahmed N, Liu CY, Yildirim I, Nelson K, Jenness SM, Maldonado H, Kazi M, Srinivasan R, Mohan VR, Melegaro A, Malik F, Bardaji A, Omer SB, Lopman B

    Emerging Infectious Diseases; 31(1): 94–103

    JournalPubMed

2024

  1. 106

    Individual & Joint Associations of Sexual Stigma and Mental Distress with PrEP Uptake, Adherence and Persistence Among US Gay and Bisexual Men

    Onwubiko UN, Murray SM, Rao A, Chamberlain AT, Sanchez TH, Benkeser D, Holland DP, Jenness SM, Baral SD

    Social Science & Medicine; 363: 117493

    JournalPubMed

  2. 105

    Exploring the Intersections of Sexual Stigma, Poverty and Mental Health in HIV-Negative Gay, Bisexual and Other Men Who Have Sex with Men in the United States

    Onwubiko UN, Murray SM, Rao A, Chamberlain AT, Sanchez TH, Benkeser D, Holland DP, Jenness SM, Baral SD

    PLoS Mental Health; 1(7): e0000212

    JournalPubMed

  3. 104

    Understanding the Typology of PrEP Persistence Trajectories among Male PrEP Users in the U.S.

    Chen YN, Zhou J, Kirkham HS, Witt EA, Jenness SM, Wall KM, Kamaleswaran R, Naimi AI, Siegler AJ

    Open Forum Infectious Diseases; 11(11): ofae584

    JournalPubMed

  4. 103

    Use of Doxycycline and Other Antibiotics as Bacterial Sexually Transmitted Infection Prophylaxis in a U.S. Sample of Primarily Gay and Bisexual Men

    Traeger MW, Krakower D, Mayer KH, Jenness SM, Marcus JL

    Sexually Transmitted Diseases; 51(12): 763–771

    JournalPubMed

  5. 102

    The impact of COVID-19 national lockdowns on drug-resistant tuberculosis in KwaZulu-Natal, South Africa: a spatial analysis

    Harrington KRV, Gandhi NR, Shah NS, Naidoo K, Auld SC, Andrews JR, Brust JCM, Lutchminarain K, Coe M, Willis F, Campbell A, Cohen T, Jenness SM, Waller L

    Annals of Epidemiology; 97: 44–51

    JournalPubMed

  6. 101

    Comprehensive Profiling of Social Mixing Patterns in Resource Poor Countries: A Mixed Methods Research Protocol

    Aguolu OG, Kiti MC, Nelson K, Liu CY, Sundaram M, Gramacho S, Jenness SM, Melegaro A, Sacoor C, Bardaji A, Macicame I, Jose A, Cavele N, Amosse F, Uamba M, Jamisse E, Tchavana C, Giovanni Maldonado Briones H, Jarquín C, Ajsivinac M, Pischel L, Ahmed N, Mohan VR, Srinivasan R, Samuel P, John G, Ellington K, Augusto Joaquim O, Zelaya A, Kim S, Chen H, Kazi M, Malik F, Yildirim I, Lopman B, Omer SB

    PLoS One; 19(6): e0301638

    JournalPubMed

  7. 100

    Dynamic Contact Networks of Residents of an Urban Jail in the Era of SARS-CoV-2

    Jenness SM, Wallrafen-Sam K, Schneider I, Kennedy S, Akiyama MJ, Spaulding AC

    Epidemics; 47: 100772

    JournalPubMed

  8. 97

    Improving and Extending STERGM Approximations Based on Cross-Sectional Data and Tie Durations

    Klumb C, Morris M, Goodreau SM, Jenness SM

    Journal of Computational and Graphical Statistics; 33(1): 166–180

    JournalPubMed

2023

  1. 99

    Potential Impact of Doxycycline Post-Exposure Prophylaxis Prescribing Strategies on Incidence of Bacterial Sexually Transmitted Infections

    Traeger MW, Mayer KH, Krakower DS, Gitin S, Jenness SM, Marcus JL

    Clinical Infectious Diseases; 82(2): 304–311

    JournalPubMed

  2. 98

    Substance Use and Variation in Sexual Partnership Rates among Young MSM and Young Transgender Women: Disaggregating Between and Within-Person Associations

    Janulis P, Jenness SM, Risher K, Phillips G, Mustaski B, Birkett M

    Drug and Alcohol Dependence; 252: 110968

    JournalPubMed

  3. 96

    Potential contribution of PrEP uptake by adolescents 15-17 years old to achieving the ‘Ending the HIV Epidemic’ incidence reduction goals in the US South

    Hamilton DT, Wang LY, Hoover KW, Smith DK, Delaney KP, Li J, Hoyte T, Jenness SM, Goodreau SM

    PLoS One; 18(11): e0288588

    JournalPubMed

  4. 95

    Changing social contact patterns among US workers during the COVID-19 pandemic: April 2020 to December 2021

    Kiti MC, Aguolu OG, Zelaya A, Chen HY, Ahmed N, Batross J, Liu CY, Nelson KN, Jenness SM, Melegaro A, Ahmed F, Malik F, Omer SB, Lopman BA

    Epidemics; 45: 100727

    JournalPubMed

  5. 94

    Metapopulation Dynamics of SARS-CoV-2 Transmission in a Small-Scale Amazonian Society

    Kraft TS, Seabright E, Alami S, Jenness SM, Hooper P, Beheim B, Davis H, Cummings DK, Rodriguez DE, Gayuba MG, Miner E, de Lamballerie X, Inchauste L, Priet S, Trumble BC, Stieglitz J, Kaplan H, Gurven MD

    PLoS Biology; 21(8): e3002108

    JournalPubMed

  6. 93

    Partnership Types and Coital Frequency as Predictors of Gonorrhea and Chlamydia among Young MSM and Young Transgender Women

    Janulis P, Goodreau SM, Morris M, Birkett M, Phillips G, Risher K, Mustanski B, Jenness SM

    International Journal of STD & AIDS; 34(10): 694–701

    JournalPubMed

  7. 92

    The Impact of the COVID-19 Pandemic on Sexual Behavior and HIV Prevention and Treatment Services among U.S. Men Who Have Sex with Men in the Post-Lockdown Era

    Mann LM, Sanchez T, Stephenson R, Sullivan PS, Jenness SM

    American Journal of Men’s Health; 17(2): 15579883231168602

    JournalPubMed

  8. 91

    Achieving the ‘Ending the HIV Epidemic in the U.S.’ Incidence Reduction Goals among At-Risk Populations in the South

    Hamilton DT, Hoover KW, Smith DK, Delaney KP, Wang LY, Li J, Hoyte T, Jenness SM, Goodreau SM

    BMC Public Health; 23(1): 716

    JournalPubMed

  9. 90

    Estimated Number of Incident HIV Infections in Men Who Have Sex with Men Attributable to Gonorrhea and Chlamydial Infection, per Gonococcal or Chlamydial Infection, in the United States

    Jones J, Jenness SM, Le Guillou A, Sullivan PS, Gift TL, Delaney KP, Chesson H

    Sexually Transmitted Diseases; 50(2): 83–85

    JournalPubMed

2022

  1. 89

    Factors Influence the Decision to Receive Seasonal Influenza Vaccination among US Corporate Non-Healthcare Workers

    Aguolu OG, Willebrand K, Elharake JA, Qureshi HM, Kiti MC, Liu CY, Mesa AR, Nelson K, Jenness SM, Melegaro A, Ahmed F, Yildirim I, Malik FA, Lopman B, Omer SA

    Human Vaccines & Immunotherapeutics; 18(6): e2122379

    JournalPubMed

  2. 88

    The Role of HIV Partner Services in the Modern Biomedical HIV Prevention Era: A Network Modeling Study

    Jenness SM, Le Guillou A, Lyles C, Bernstein KT, Krupinsky K, Enns EA, Sullivan PS, Delaney KP

    Sexually Transmitted Diseases; 49(12): 801–807

    JournalPubMed

  3. 87

    Comparing Sexual Network Mean Active Degree Measurement Metrics among Men Who Have Sex with Men

    Chandra C, Morris M, Van Meter C, Goodreau SM, Sanchez T, Janulis P, Birkett M, Jenness SM

    Sexually Transmitted Diseases; 49(12): 808–814

    JournalPubMed

  4. 86

    Correlations Between Community-Level HIV Preexposure Prophylaxis Coverage and Individual-Level Sexual Behaviors among US Men Who Have Sex with Men

    Mann LM, Le Guillou A, Goodreau SM, Marcus JL, Sanchez T, Weiss KM, Jenness SM

    AIDS; 36(14): 2015–2023

    JournalPubMed

  5. 85

    Sexual Mixing by Diagnosed HIV Status and Pre-Exposure Prophylaxis Use among Men Who Have Sex with Men: Stochastic Reclassification to Address Information Bias in Egocentric Network Data

    Maloney KM, Benkeser D, Sullivan PS, Kelley C, Sanchez T, Jenness SM

    Epidemiology; 33(6): 808–816

    JournalPubMed

  6. 84

    Effect of Screening and Treatment for Gonorrhea and Chlamydia on HIV Incidence among Men Who Have Sex with Men in the United States: A Modeling Analysis

    Jones J, Le Guillou A, Gift TL, Chesson H, Delaney K, Lyles C, Berruti A, Sullivan PS, Jenness SM

    Sexually Transmitted Diseases; 49(10): 663–668

    JournalPubMed

  7. 83

    Cost-Effectiveness of Interventions to Improve HIV Pre-Exposure Prophylaxis Initiation, Adherence, and Persistence among Men Who Have Sex with Men

    Wheatley MM, Knowlton G, Kao SY, Jenness SM, Enns E

    Journal of Acquired Immune Deficiency Syndromes; 90(1): 40–49

    JournalPubMed

  8. 82

    A Review of COVID-19 Transmission Dynamics and Clinical Outcomes on Cruise Ships Worldwide, January to October 2020

    Willebrand KS, Pischel L, Malik AA, Jenness SM, Omer SB

    Eurosurveillance; 27(1): 2002113

    JournalPubMed

2021

  1. 81

    A Behavioral Cascade of HIV Seroadaptation among US Men Who Have Sex with Men in the Era of PrEP and U=U

    Goodreau SM, Maloney KM, Sanchez TH, Morris M, Janulis P, Jenness SM

    AIDS & Behavior; 25(12): 3933–43

    JournalPubMed

  2. 80

    Population Impact and Efficiency of Improvements to HIV PrEP Under Conditions of High ART Coverage among San Francisco Men Who Have Sex with Men

    Le Guillou A, Buchbinder S, Scott H, Liu A, Havlir D, Scheer S, Jenness SM

    Journal of Acquired Immune Deficiency Syndromes; 88(4): 340–347

    JournalPubMed

  3. 79

    Dynamic Network Strategies for SARS-CoV-2 Control on a Cruise Ship

    Jenness SM, Willebrand KS, Malik AA, Lopman BA, Omer S

    Epidemics; 37: 100488

    JournalPubMed

  4. 78

    Gaps in Screening of Sexually Transmitted Infections among Men Who Have Sex with Men during PrEP Care in the United States

    Chandra CL, Weiss KM, Kelley CF, Marcus JL, Jenness SM

    Clinical Infectious Diseases; 73(7): e2261–69

    JournalPubMedPDF

  5. 77

    Association Between HIV PrEP Indications and Use in a National Sexual Network Study of Men Who Have Sex with Men

    Weiss KM, Prasad P, Sanchez T, Goodreau SM, Jenness SM

    Journal of the International AIDS Society; 24(10): e25826

    JournalPubMed

  6. 76

    Rapid Review of Social Contact Patterns During the COVID-19 Pandemic

    Liu CY, Berlin J, Kiti MC, Del Fava E, Grow A, Zagheni E, Melegaro A, Jenness SM, Omer S, Lopman B, Nelson N

    Epidemiology; 32(6): 781–91

    JournalPubMed

  7. 75

    Social Contact Patterns among Employees in 3 U.S. Companies During Early Phases of the COVID-19 Pandemic, April to June 2020

    Kiti MC, Aguola OG, Liu C, Mesa AR, Regina R, Woody M, Willebrand K, Couzens C, Bartelsmeyer T, Nelson KN, Jenness SM, Riley S, Melegaro A, Ahmed F, Malik F, Lopman BA, Omer SB

    Epidemics; 36: 100481

    JournalPubMed

  8. 74

    The HIV/STI Epidemic Potential for Dynamic Sexual Networks of Men Who Have Sex with Men in Atlanta and San Francisco

    Anderson EJ, Weiss KM, Morris M, Sanchez TH, Prasad P, Jenness SM

    Epidemiology; 32(5): 681–89

    JournalPubMed

  9. 73

    A Decision Analytics Model to Optimize Investment in Interventions Targeting the HIV PrEP Cascade of Care

    Jenness SM, Knowlton G, Smith DK, Marcus JL, Anderson EJ, Siegler AJ, Jones J, Sullivan PS, Enns E

    AIDS; 35(9): 1479–89

    JournalPubMed

  10. 72

    Temporal Variation in One-Time Partnership Rates among Young Men Who Have Sex with Men and Transgender Women

    Janulis P, Goodreau SM, Birkett M, Phillips G, Mustanski B, Jenness SM

    Journal of Acquired Immune Deficiency Syndromes; 87(3): e214–e221

    JournalPubMed

  11. 71

    Projected HIV and Bacterial STI Incidence Following COVID-Related Sexual Distancing and Clinical Service Interruption

    Jenness SM, Le Guillou A, Chandra C, Mann LM, Sanchez T, Westreich D, Marcus JL

    Journal of Infectious Diseases; 223(6): 1019–28

    JournalPubMed

  12. 70

    A Model of COVID-19 Transmission and Control on University Campuses

    Lopman B, Liu CY, Le Guillou A, Handel A, Lash TL, Isakov AP, Jenness SM

    Scientific Reports; 11(1): 5900

    JournalPubMedWeb app

  13. 69

    Is It the Timing? Short-Term Mobility and Coital Frequency in Agbogbloshie, Ghana

    Cassels S, Mwenda K, Biney A, Jenness SM

    Archives of Sexual Behavior; 50(2): 589–600

    JournalPubMed

  14. 68

    Projected Impact of Concurrently Available Long-Acting Injectable and Daily-Oral HIV Pre-Exposure Prophylaxis

    Maloney KM, Le Guillou A, Driggers R, Sarkar S, Anderson EJ, Malik AA, Jenness SM

    Journal of Infectious Diseases; 223(1): 72–82

    JournalPubMedPDF

  15. 67

    To Contact Tracing… and Beyond!

    Westreich D, Jenness SM, Marcus JL

    Clinical Infectious Diseases; 72(4): 724–5

    JournalPubMed

2020

  1. 66

    Leveraging Modularity During Replication of High-Fidelity Models: Lessons from Replicating an Agent-Based Model for HIV Prevention

    Vermeer W, Hjorth A, Jenness SM, Brown CH, Wilensky U

    Journal of Artificial Societies and Social Simulation; 23(4): 7

    JournalPubMed

  2. 65

    Modeling an Integrated HIV Prevention and Care Continuum to Achieve the Ending the HIV Epidemic Goals

    Jenness SM, Johnson JA, Hoover KW, Smith DK, Delaney K

    AIDS; 34(14): 2103–2113

    JournalPubMedPDF

  3. 64

    Modeling Missing Cases and Transmission Links in Networks of Extensively Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa

    Nelson KN, Gandhi NR, Mathema B, Lopman BA, Brust JC, Auld SC, Ismail N, Omar SV, Brown RS, Allana S, Campbell A, Moodley P, Mlisana K, Shah NS, Jenness SM

    American Journal of Epidemiology; 189(7): 735–745

    JournalPubMedPDF

  4. 63

    A Theoretically Based Mobile App to Increase Pre-Exposure Prophylaxis Uptake Among Men Who Have Sex with Men: Protocol for a Randomized Controlled Trial

    Jones J, Dominguez K, Stephenson R, Stekler J, Castel J, Mena L, Jenness SM, Siegler A, Sullivan PS

    Journal of Medical Internet Research, Research Protocols; 9(2): e16231

    JournalPubMed

  5. 62

    Estimated Number of Men who have Sex with Men with Indications for HIV Pre-Exposure Prophylaxis in a National Sexual Network Study

    Weiss KM, Prasad P, Ramaraju R, Zlotorzynska M, Jenness SM

    Journal of Acquired Immune Deficiency Syndromes; 84(1): 10–17

    JournalPubMed

  6. 61

    Mandatory Vaccination in Europe

    Vaz O, Ellingson MK, Weiss P, Jenness SM, Bardaji A, Bednarczyk RA, Omer SB

    Pediatrics; 145(2): e20190620

    JournalPubMed

  7. 60

    Egocentric Sexual Networks of Men Who Have Sex with Men in the United States: Results from the ARTnet Study

    Weiss KM, Goodreau SM, Morris M, Prasad P, Ramaraju R, Sanchez T, Jenness SM

    Epidemics; 30: 100386

    JournalPubMedPDF

  8. 59

    Assessing the Validity of Sexual Network Degree among Men Who Have Sex with Men using Prospective Cohort Data

    Uong S, Rosenberg ES, Luisi N, Goodreau SM, Sullivan PS, Jenness SM

    Epidemiology; 31(2): 229–237

    JournalPubMedPDF

  9. 58

    Social Mixing and Clinical Features Linked with Transmission in a Network of Extensively Drug-Resistant (XDR) Tuberculosis Cases in KwaZulu-Natal, South Africa

    Nelson KN, Jenness SM, Mathema B, Lopman BA, Auld SC, Shah NS, Brust JC, Ismail N, Omar SV, Brown TS, Allana S, Campbell A, Moodley P, Mlisana K, Gandhi NR

    Clinical Infectious Diseases; 70(11): 2396–2402

    JournalPubMed

2019

  1. 57

    Optimizing Coverage versus Frequency for Sexually Transmitted Infection Screening of Men Who Have Sex with Men

    Weiss KM, Jones JS, Anderson EJ, Gift T, Chesson H, Bernstein K, Workowski K, Tuite A, Rosenberg ES, Sullivan PS, Jenness SM

    Open Forum Infectious Diseases; 6(10): ofz405

    JournalPubMedPDF

  2. 56

    Epidemiological Impact of Expedited Partner Therapy for Men Who Have Sex with Men: A Modeling Study

    Weiss KM, Jones J, Katz DA, Gift TL, Bernstein K, Workowski K, Rosenberg E, Jenness SM

    Sexually Transmitted Diseases; 46(11): 697–705

    JournalPubMedPDF

  3. 55

    Advancing PrEP Delivery: Protocol for a Randomized Controlled Trial for Use of ePrEP to Expand PrEP Access to Non-Urban Young MSM

    Siegler A, Brock JB, Hurt CB, Ahlschlager L, Dominguez K, Kelley C, Jenness SM, Wilde G, Jameson S, Bailey-Herring G, Mena LA

    Journal of Medical Internet Research, Research Protocols; 8(6): e13982

    JournalPubMedPDF

  4. 54

    Trends in Number and Composition of Sex Partners among Men Who Have Sex with Men in the United States, National HIV Behavioral Surveillance, 2008–2014

    Chapin-Bardales J, Rosenberg ES, Sullivan PS, Jenness SM, Paz-Bailey G

    Journal of Acquired Immune Deficiency Syndromes; 81(3): 257–265

    JournalPubMed

  5. 53

    Modeling the Joint Effects of Adolescent and Adult PrEP for Sexual Minority Males in the United States

    Hamilton D, Rosenberg ES, Jenness SM, Sullivan PS, Wang LY, Dunville RL, Barrios LC, Aslam M, Goodreau SM

    PLoS One; 14(5): e0217314

    JournalPubMed

  6. 52

    Coital Frequency and Male Concurrent partnerships During Pregnancy and Postpartum in Agbogbloshie, Ghana

    Cassels S, Jenness SM, Biney A

    AIDS & Behavior; 23(6): 1508–1517

    JournalPubMed

  7. 51

    Proportion of Incident HIV Cases among Men Who Have Sex with Men Attributable to Gonorrhea and Chlamydia: A Modeling Analysis

    Jones J, Weiss K, Mermin J, Dietz P, Rosenberg ES, Gift T, Chesson H, Sullivan PS, Lyles C, Bernstein K, Jenness SM

    Sexually Transmitted Diseases; 46(6): 357–363

    JournalPubMedPDF

  8. 50

    Population Coverage and Factors Associated with Participation Following a Mass Drug Administration of Azithromycin for Trachoma Elimination in Amhara, Ethiopia

    Ebert CD, Astale T, Sata E, Zerihun M, Nute AW, Stewart AEP, Gessese D, Ayenew G, Ayele Z, Melak B, Chanyalew M, Gashaw B, Tadesse Z, Kelly E, Jenness SM, Nash SD

    Trop Med Int Health; 24(4): 493–501

    JournalPubMed

  9. 49

    Addressing Gaps in HIV Preexposure Prophylaxis Care to Reduce Racial Disparities in HIV Incidence in the United States

    Jenness SM, Maloney KM, Smith SK, Hoover KW, Rosenberg ES, Goodreau SM, Weiss KM, Liu AY, Rao D, Sullivan PS

    American Journal of Epidemiology; 188(4): 743–752

    JournalPubMedPDF

  10. 48

    Bacterial STI Screening Rates by Symptomatic Status among Men Who Have Sex with Men in the United States: A Hierarchical Bayesian Analysis

    Jenness SM, Weiss KM, Prasad P, Zlotorzynska M, Sanchez T

    Sexually Transmitted Diseases; 46(1): 25–30

    JournalPubMedPDFWeb app

2018

  1. 47

    Potential Impact of HIV Preexposure Prophylaxis Among Black and White Adolescent Sexual Minority Males: A Modeling Study

    Hamilton DT, Goodreau SM, Jenness SM, Sullivan PS, Wang LY, Dunville RL, Barrios LC, Rosenberg ES

    American Journal of Public Health; 108(S4): S284–S291

    JournalPubMed

  2. 46

    Evaluating a neonatal intensive care unit HRSA surveillance programme using agent-based network modeling

    Goldstein ND, Jenness SM, Tuttle D, Power M, Paul DA, Eppes SC

    Journal of Hospital Infection; 100(3): 337–343

    JournalPubMedPDF

  3. 45

    The Association Between Monetary and Sexual Delay Discounting and Risk Sexual Behavior in an Online Sample of Men Who Have Sex with Men

    Jones J, Guest JL, Sullivan PS, Sales J, Jenness SM, Kramer M

    AIDS Care; 30(7): 844–852

    JournalPubMed

  4. 44

    Concordance Between Monetary and Sexual Delay Discounting in Men Who Have Sex with Men

    Jones J, Guest JL, Sullivan PS, Kramer M, Jenness SM, Sales J

    Sexual Health; 15(3): 214–222

    JournalPubMed

  5. 43

    Development of an Agent-Based Model to Investigate the Impact of HIV Self-Testing Programs for Men Who Have Sex with Men in Atlanta and Seattle

    Luo W, Katz DA, Hamilton DT, McKenney J, Jenness SM, Goodreau SM, Stekler JD, Rosenberg ES, Sullivan PS

    Journal of Medical Internet Research, Public Health Surveillance; 4(2): e58

    JournalPubMed

  6. 42

    Moving Forward with Treatment of Gonorrhea for Users of HIV Preexposure Prophylaxis Given the Threat of Antimicrobial Resistance

    Jenness SM, Weiss KM, Goodreau SM, Rosenberg E, Gift T, Chesson H, Hoover KW, Smith DK, Liu AY, Sullivan P

    Clinical Infectious Diseases; 67(1): 155–156

    JournalPubMed

  7. 41

    EpiModel: An R Package for Mathematical Modeling of Infectious Disease over Networks

    Jenness SM, Goodreau SM, Morris M

    Journal of Statistical Software; 84(8): 1-47

    JournalPubMedPDF

  8. 40

    Targeting Strategies for HIV Pre-Exposure Prophylaxis among Adolescent Sexual Minority Males in Higher Prevalence Areas of the United States: A Modeling Study

    Goodreau SM, Hamilton DT, Jenness SM, Sullivan PS, Valencia RK, Wang LY, Dunville RL, Barrios LC, Rosenberg ES

    Journal of Adolescent Health; 62(3): 311–319

    JournalPubMed

2017

  1. 39

    Incidence of Gonorrhea and Chlamydia Following HIV Preexposure Prophylaxis among Men Who Have Sex with Men

    Jenness SM, Weiss KM, Goodreau SM, Rosenberg E, Gift T, Chesson H, Hoover KW, Smith DK, Liu AY, Sullivan P

    Clinical Infectious Diseases; 65(5): 712–18

    JournalPubMedPDF

  2. 38

    Sources of Racial Disparities in HIV Prevalence in Men Who Have Sex with Men in Atlanta, GA: A Modeling Study

    Goodreau SM, Rosenberg ES, Jenness SM, Luisi N, Stansfield SE, Millett G, Sullivan P

    Lancet HIV; 4(7): e311–e320

    JournalPubMedPDFWeb app

  3. 37

    Trends in HIV and HCV Risk Behaviors and Prevalent Infection among People Who Inject Drugs in New York City, 2005–2012

    Neaigus A, Reilly KH, Jenness SM, Hagan H, Wendel T, Gelpi-Acosta C, Marshall DM

    Journal of Acquired Immune Deficiency Syndromes; 75 Suppl 3: S325–S332

    JournalPubMed

  4. 36

    Geographic Mobility and Potential Bridging for Sexually Transmitted Infections in Agbogbloshie, Ghana

    Cassels S, Jenness SM, Biney AA, Dodoo FN

    Social Science and Medicine; 184: 27–39

    JournalPubMed

  5. 35

    Public Health Benefit of Peer-Referral Strategies for Detecting Undiagnosed HIV Infection among High-Risk Heterosexuals in New York City

    Gwadz M, Cleland C, Perlman D, Hagan H, Jenness SM, Leonard N, Ritchie A, Kutnick A

    Journal of Acquired Immune Deficiency Syndromes; 74(5): 499–507

    JournalPubMed

  6. 34

    Individual HIV Risk versus Population Impact of Risk Compensation after Preexposure Prophylaxis Initiation among US Men Who Have Sex with Men

    Jenness SM, Sharma A, Goodreau SM, Rosenberg E, Hoover KW, Smith DK, Sullivan P

    PLoS One; 12(1): e0169484

    JournalPubMed

2016

  1. 33

    Impact of CDC’s HIV Pre-Exposure Prophylaxis Guidelines among MSM in the United States

    Jenness SM, Goodreau SM, Rosenberg E, Beylerian EN, Hoover KW, Smith DK, Sullivan PS

    Journal of Infectious Diseases; 214(12): 1800–1807

    JournalPubMedWeb app

  2. 32

    Effectiveness of Combination Packages for HIV-1 Prevention in Sub-Saharan Africa Depends on Partnership Network Structure

    Jenness SM, Goodreau SM, Morris M, Cassels S

    Sexually Transmitted Infections; 92: 619–624

    JournalPubMedPDF

  3. 31

    It’s Never Just HIV: Exposure to an HIV Prevention Media Campaign and Behavior Change Among Men Who Have Sex with Men Participating in the National HIV Behavioral Surveillance System in New York City

    Reilly KH, Neaigus A, Shepard CW, Cutler BH, Sweeney MM, Jenness SM, Wendel T, Marshall DM, Hagan H

    LGBT Health; 3(4): 314–18

    JournalPubMed

  4. 30

    Experiences of Discrimination and HIV Risk Among Men Who Have Sex with Men in New York City

    Reilly KH, Neaigus A, Jenness SM, Wendel T, Marshall DM, Hagan H

    American Journal of Men’s Health; 10(6): 505–514

    JournalPubMed

  5. 29

    Community Sexual Bridging Among Heterosexuals at High-Risk of HIV in New York City

    Neaigus A, Jenness SM, Reilly KH, Youm Y, Hagan H, Wendel T, Gelpi-Acosta C

    AIDS & Behavior; 20(4): 722–36

    JournalPubMed

  6. 28

    Exploring Factors Associated with Recent HIV Testing among Heterosexuals at High Risk for HIV Infections Recruited with Venue-Based Sampling

    Gwadz M, Cleland CM, Jenness SM, Silverman E, Hagan H, Ritchie AS, Leonard NR, McCright-Gill T, Martinez B, Swain Q, Kutnick A, Sherpa D

    Journal of AIDS & Clinical Research; 7:2: 1000544

    JournalPubMed

2015

  1. 27

    Minimal Coital Dilution in Accra, Ghana

    Jenness SM, Biney AA, Ampofo WK, Nii-Amoo Dodoo F, Cassels S

    Journal of Acquired Immune Deficiency Syndromes; 69: 85–91

    JournalPubMedPDF

  2. 26

    Strategies to Uncover Undiagnosed HIV Infection among Heterosexuals at High Risk and Link Them to HIV Care with High Retention: a ‘Seek, Test, Treat, and Retain’ Study

    Gwadz M, Cleland CM, Hagan H, Jenness SM, Kutnick A, Leonard NR, Applegate E, Ritchie AS, Banfield A, Belkin M, Cross B, Del Olmo M, Ha K, Martinez BY, McCright-Gill T, Swain QL, Perlman DC, Kurth AE

    BMC Public Health; 15(1): 481

    JournalPubMed

2014

  1. 25

    Spatial Recruitment Bias in Respondent-Driven Sampling: Implications for HIV Prevalence Estimation in Urban Heterosexuals

    Jenness SM, Neaigus A, Wendel T, Gelp-Acosta C, Hagan H

    AIDS & Behavior; 18(12): 2366–73

    JournalPubMedPDF

  2. 24

    Conceptual Framework and Research Methods for Migration and HIV Transmission Dynamics

    Cassels S, Jenness SM, Khanna AS

    AIDS & Behavior; 18(12): 2302–13

    JournalPubMedPDF

  3. 23

    Multi-level Risk Factors for Greater HIV Infection of Black Men Who Have Sex with Men in New York City

    Neaigus A, Reilly KH, Jenness SM, Wendel T, Marshall DM, Hagan H

    Sexually Transmitted Diseases; 41(7): 433–9

    JournalPubMed

  4. 22

    Factors Associated with Recent HIV Testing among Men Who Have Sex with Men in New York City

    Reilly KH, Neaigus A, Jenness SM, Wendel T, Marshall DM, Hagan H

    AIDS & Behavior; 18(S3): 297–304

    JournalPubMed

  5. 21

    Migration, Sexual Networks, and HIV in Agbogbloshie, Ghana

    Cassels S, Jenness SM, Biney AA, Ampofo WK, Dodoo FN

    Demographic Research; 31(28): 861–88

    JournalPubMedPDF

  6. 20

    Trends in HIV Prevalence and Risk Behavior Among Men Who Have Sex with Men in New York City, 2004–11

    Reilly KH, Neaigus A, Jenness SM, Wendel T, Hagan H, Marshall DM, Murrill CS, Koblin BA

    AIDS Education & Prevention; 26(2): 134–43

    JournalPubMed

  7. 19

    Syringe Access, Syringe Sharing, and Police Encounters among People who Inject Drugs in New York City: A Community-Level Perspective

    Beletsky L, Heller D, Jenness SM, Neaigus A, Gelpi-Acosta C, Hagan H

    International Journal of Drug Policy; 25(1): 105–11

    JournalPubMed

2013

  1. 18

    Dual HIV Risk: Receptive Syringe Sharing and Unprotected Sex Among HIV-Negative Injection Drug Users in New York City

    Neaigus A, Reilly KH, Jenness SM, Hagan H, Wendel T, Gelpi-Acosta C

    AIDS & Behavior; 17(7): 2501–9

    JournalPubMed

  2. 17

    High HIV Prevalence Among Low-Income, Black Women in New York City with Self-Reported HIV Negative and Unknown Status

    Reilly KH, Neaigus A, Jenness SM, Hagan H, Wendel T, Gelp-Acosta C

    Journal of Women’s Health; 22(9): 745–54

    JournalPubMed

  3. 16

    Reciprocal Sex Partner Concurrency and Sexually Transmitted Diseases among Heterosexuals at High-Risk of HIV Infection

    Neaigus A, Jenness SM, Hagan H, Murrill CS, Wendel T

    Journal of Urban Health; 90(5): 902–14

    JournalPubMed

  4. 15

    Short-term Mobility and Increased Partnership Concurrency among Men in Zimbabwe

    Cassels S, Manhart L, Jenness SM, Morris M

    PLoS One; 8(6): e66342

    JournalPubMedPDF

2012

  1. 14

    Delayed Entry into HIV Medical Care after HIV Diagnosis: Risk Factors and Research Methods

    Jenness SM, Myers J, Neaigus A, Lulek J, Navejas M, Raj-Singh S

    AIDS Care; 24(10): 1240–8

    JournalPubMedPDF

  2. 13

    Using HIV Surveillance Data to Monitor Missed Opportunities for Linkage and Engagement in HIV Medical Care

    Bertolli J, Shouse RL, Beer L, Valverde E, Fagan J, Jenness SM, Wogayehu A, Johnson C, Neaigus A, Hillman D, Courogen M, Brady KA, Bolden B

    Open AIDS Journal; 6(Supp 1): 131–41

    JournalPubMed

  3. 12

    Estimating HIV Incidence and the Correlates of Infection in Venue-Recruited Men Who Have Sex with Men in New York City

    Neaigus A, Jenness SM, Hagan H, Murrill CS, Torian LV, Wendel T, Gelpi-Acosta C

    AIDS & Behavior; 16(3): 516–24

    JournalPubMed

2011

  1. 11

    Recruitment-Adjusted Estimates of HIV Prevalence and Risk among Men Who Have Sex with Men: Effects of Weighting Venue-Based Sampling Data

    Jenness SM, Neaigus A, Hagan H, Wendel T, Gelpi-Acosta C, Murrill CS

    Public Health Reports; 126(5): 635–42

    JournalPubMedPDF

  2. 10

    Sexual and Injection-Related Risk in Puerto Rican-Born Injection Drug Users Living in New York City: a Mixed-Methods Analysis

    Gelpi-Acosta C, Hagan H, Jenness SM, Wendel T, Neaigus A

    Harm Reduction Journal; 8(1): 28

    JournalPubMedPDF

  3. 9

    Patterns of Exchange Sex among High-Risk Men and Women

    Jenness SM, Kobrak P, Wendel T, Neaigus A, Murrill CS, Hagan H

    Journal of Urban Health; 88(2): 329–41

    JournalPubMed

  4. 8

    Unprotected Anal Intercourse and Sexually Transmitted Diseases in High-Risk Heterosexual Women

    Jenness SM, Begier E, Neaigus A, Murrill CS, Wendel T, Hagan H

    American Journal of Public Health; 101(4): 745–50

    JournalPubMedPDF

  5. 7

    Performance of Pre-Market Rapid Hepatitis C Virus Antibody Assays in Four National HIV Behavioral Surveillance System Sites

    Smith BD, Teshale E, Jewett A, Weinbaum CM, Neaigus A, Hagan H, Jenness SM, Melville SK, Burt R, Thiede H, Al-Tayyib A, Pannala PR, Oster AM, Finlayson T, Bowles KE, DiNenno E

    Clinical Infectious Diseases; 53(8): 780–86

    JournalPubMedPDF

  6. 6

    Estimated HIV Incidence among High-Risk Heterosexuals in New York City, 2007

    Jenness SM, Neaigus A, Murrill CS, Gelpi-Acosta C, Wendel T, Hagan H

    Journal of Acquired Immune Deficiency Syndromes; 56(2): 193–97

    JournalPubMedPDF

  7. 5

    Continuing HIV Risk in New York City Injection Drug Users: The Association of Syringe Source and Syringe Sharing

    Jenness SM, Hagan H, Liu KL, Wendel T, Murrill CS

    Substance Use & Misuse; 46(2-3): 192–200

    JournalPubMedPDF

2010

  1. 4

    Reconsidering the Internet as an HIV/STD Risk for Men Who Have Sex with Men

    Jenness SM, Hagan H, Wendel T, Murrill CS, Neaigus A, Gelpi-Acosta C

    AIDS & Behavior; 14(6): 1353–61

    JournalPubMedPDF

  2. 3

    Herpes Simplex Virus Type 2 Associated with HIV Infection among New York Heterosexuals Living in High-Risk Areas

    Hagan H, Jenness SM, Wendel T, Murrill CS, Neaigus A, Gelpi-Acosta C

    International Journal of STD & AIDS; 21(8): 580–3

    JournalPubMedPDF

  3. 2

    HIV Infection and Sexual Partnerships between Injection Drug Users and Non-Injectors

    Jenness SM, Neaigus A, Hagan H, Murrill CS, Wendel T

    AIDS Patient Care & STDS; 24(3): 175–81

    JournalPubMedPDF

2009

  1. 1

    Missed Opportunities for HIV Testing among High-Risk Heterosexuals

    Jenness SM, Murrill CS, Liu KL, Wendel T, Begier E, Hagan H

    Sexually Transmitted Diseases; 36(11): 704–10

    JournalPubMedPDF