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Publications

Peer-reviewed publications by Samuel M. Jenness on infectious disease modeling, HIV and STI prevention, network epidemiology, and the EpiModel platform.

A complete listing of 125+ peer-reviewed publications. Filter by research area or year, or search by title, author, or journal. Each entry links to PubMed and DOI, with one-click BibTeX/RIS export.

External profiles: PubMed · Google Scholar · ORCID · CV (PDF)

  1. 125. Chandra C, Maloney KM, Le Guillou A, Hoover KW, Jenness SM. Modeling the Potential Impact of Scaling Up Event-Driven PrEP among Gay, Bisexual, and Other Men Who Have Sex with Men. Journal of Acquired Immune Deficiency Syndromes. 2026; In press. BibTeX RIS
  2. 124. Jenness SM, Manuelpillai B, Goodreau SM, Marcus JL, Enns EA, Lucas IL, Acero Martinez C, Siegler AJ, Sanchez T. Evolving Drivers of Pre-Exposure Prophylaxis Discontinuation among United States Men Who Have Sex with Men, 2018-2024. AIDS. 2026; In press. BibTeX RIS
  3. 123. Chen D, Prasanna S, Srinivasan R, Le Guillou A, Raghava V, Omer SB, Lopman BA, Jenness SM. Temporal Connectivity of Social Contact Networks in Urban and Rural India. Epidemiology. 2026; In press. BibTeX RIS
  4. 122. Traeger MW, Leyden WA, Eberhart LG, Volk JE, Silverberg MJ, Horberg MA, Davis TL, Mayer KH, Krakower DS, Young JG, Jenness SM, Marcus JL. Long-Acting Injectable Cabotegravir HIV PrEP Uptake, Adherence, and Persistence in Two Large US Integrated Healthcare Systems. Journal of Acquired Immune Deficiency Syndromes. 2026. [ DOI · PubMed ] BibTeX RIS
  5. 121. Gandhi NR, Naidoo K, Lutchminarain K, Omar SV, Yoshii H, Willis F, Boodhram R, Gwala T, Campbell A, Coe MM, Evans AN, Tang L, Chitwood MH, Hlathi SR, Mbatha PN, Joseph L, Van Der Meulen H, Mlisana K, Jenness SM, Lurie MN, Kreiswirth BN, Warren JL, Nelson KN, Auld SC, Brust JCM, Cohen T, Mathema B, Shah NS. Role of Casual Contact in Drug-Resistant Tuberculosis Transmission: A Molecular Epidemiology Study. American Journal of Respiratory and Critical Care Medicine. 2026. [ DOI · PubMed ] BibTeX RIS
  6. 120. Anderson EJ, Gandhi NR, Sanchez TH, Enns EA, Jenness SM. Predictive Models to Identify Factors Associated with a High One-Time Sexual Partnership Rate Among U.S. Men Who Have Sex with Men. AIDS & Behavior. 2026; Epub ahead of print. [ DOI ] BibTeX RIS
  7. 119. Jones J, Schneider I, Valencia R, Jenness SM, Butler G, Castel AD, Kulie P, Stephenson R, Stekler JD, Mena L, Sullivan PS. Randomized Controlled Trial of a HIV Prevention App to Increase Pre-Exposure Prophylaxis Uptake among Gay and Bisexual Men Who Have Sex with Men in the United States: The HealthMindr PrEP Study. Journal of Acquired Immune Deficiency Syndromes. 2025; 100(5): 424–434. [ DOI · PubMed ] BibTeX RIS
  8. 118. Harrington KR, Jenness SM, Siira M, Rothschild E, Graham T, Rabinovitz S, Shartar S, Crubezy M, Clark D, Isakov A, Chamberlain A, Cegielski JP, Andrews JR, Waller LA, Auld SC, Gandhi NR. The Application of Social Network Analysis to Examine COVID-19 Contact Tracing Networks in a University Setting. Public Health. 2026; 252: 106171. [ DOI · PubMed ] BibTeX RIS
  9. 117. Nelson KN, Kiti MC, Shiiba M, Sacoor C, Bardají A, Macicame I, Jamisse E, Tchavana C, José A, Cavele N, Maldonado H, Jarquin C, Ajsivinac HM, Samuel P, Srinivasan R, Kazi M, Allana R, Kim SS, Prasad PV, Chen D, Liu C, Jenness SM, Ahmed N, Aguolu O, Sundaram MA, Yildirim I, Malik F, Melegaro A, Lopman BA, Omer SB. Characterizing Social Behavior Relevant for Infectious Disease Transmission in Four Low- and Middle-Income Countries, 2021–2023. Nature Communications. 2025; 16(1): 9586. [ DOI · PubMed ] BibTeX RIS
  10. 116. Li Z, Knowlton GS, Wheatley MM, Jenness SM, Enns EA. Meta-Modeling as a Variance-Reduction Technique for Stochastic Model-Based Cost-Effectiveness Analyses. Medical Decision Making. 2025; 45(8): 976–986. [ DOI · PubMed ] BibTeX RIS
  11. 115. Violette LR, Jenness SM, Sanchez TH, Krakower DS, Marcus JL. Support for Over-the-Counter HIV Preexposure Prophylaxis Among Transfeminine People. JAMA Network Open. 2025; 8(8): e2527800. [ DOI · PubMed ] BibTeX RIS
  12. 114. Onwubiko UN, Benkeser D, Holand DP, Baral SD, Marcus JL, Mayer KH, Herrick B, Sinha P, Chamberlain AT, Jenness SM. Impact of Depression at HIV PrEP Initiation on Sustain PrEP Care Engagement among US Gay and Bisexual Men. Journal of Acquired Immune Deficiency Syndrome. 2025; 100(1): 57–65. [ DOI · PubMed ] BibTeX RIS
  13. 113. Wallrafen-Sam K, Quesada MG, Lopman BA, Jenness SM. Modelling the Interplay Between Responsive Individual Vaccination Decisions and the Spread of SARS-CoV-2. Epidemics. 2025; 51: 100831. [ DOI · PubMed ] BibTeX RIS
  14. 112. Liu CY, Siegler A, Sullivan P, Jenness SM, Flasche S, Lopman B, Nelson K. The Effect of COVID-19 Vaccination on Change in Contact and Implications for Transmission. Epidemics. 2025; 51: 100827. [ DOI · PubMed ] BibTeX RIS
  15. 111. Schneider I, Wallrafen-Sam K, Kennedy S, Akiyama MJ, Spaulding AC, Jenness SM. Interventions for SARS-CoV-2 Prevention among Jailed Adults: A Network-Based Modeling Analysis. Infectious Disease Modeling. 2025; 10(2): 628–638. [ DOI · PubMed ] BibTeX RIS
  16. 110. Pischel L, Aguolu OG, Ahmed N, Campbell MM, Borg R, Duckwall C, Willebrand K, Zaleski A, Paintsil EE, Muenker MC, Malik AA, Kiti MC, Warren JL, Jenness SM, Lopman BA, Belsky J, Martinello RA, Yildirim I, Ko AI, Omer SB. Social Mixing Patterns of United States Healthcare Personnel at a Quaternary Health Center: a Prospective Observational Study. Infect Control Hosp Epidemiology. 2025; 46(3): 1–9. [ DOI · PubMed ] BibTeX RIS
  17. 109. Traeger MW, Leyden WA, Volk JE, Silverberg MJ, Horberg MA, Davis TL, Mayer KH, Krakower DS, Young JG, Jenness SM, Marcus JL. Doxycycline Postexposure Prophylaxis and Bacterial Sexually Transmitted Infections Among Individuals Using HIV Preexposure Prophylaxis. JAMA Internal Medicine. 2025; 185(3): 273–281. [ DOI · PubMed ] BibTeX RIS
  18. 108. Onwubiko UN, Le Guillou A, Lyles C, Maloney KM, Delaney KP, Jenness SM. Optimizing HIV Partner Services for Gay, Bisexual and Other Men Who Have Sex with Men Previously Diagnosed with HIV: A Modeling Study. Sexually Transmitted Diseases. 2025; 52(8): 495–502. [ DOI · PubMed ] BibTeX RIS
  19. 107. Kiti MC, Sacoor C, Aguolu OG, Zelaya A, Chen H, Kim SS, Cavele N, Jamisse E, Tchavana C, Jose A, Macicame I, Joaquim O, Ahmed N, Liu CY, Yildirim I, Nelson K, Jenness SM, Maldonado H, Kazi M, Srinivasan R, Mohan VR, Melegaro A, Malik F, Bardaji A, Omer SB, Lopman B. Social Contact Patterns in Rural and Urban Settings, Mozambique, 2021–2022. Emerging Infectious Diseases. 2025; 31(1): 94–103. [ DOI · PubMed ] BibTeX RIS
  20. 106. Onwubiko UN, Murray SM, Rao A, Chamberlain AT, Sanchez TH, Benkeser D, Holland DP, Jenness SM, Baral SD. Individual & Joint Associations of Sexual Stigma and Mental Distress with PrEP Uptake, Adherence and Persistence Among US Gay and Bisexual Men. Social Science & Medicine. 2024; 363: 117493. [ DOI · PubMed ] BibTeX RIS
  21. 105. Onwubiko UN, Murray SM, Rao A, Chamberlain AT, Sanchez TH, Benkeser D, Holland DP, Jenness SM, Baral SD. Exploring the Intersections of Sexual Stigma, Poverty and Mental Health in HIV-Negative Gay, Bisexual and Other Men Who Have Sex with Men in the United States. PLoS Mental Health. 2024; 1(7): e0000212. [ DOI · PubMed ] BibTeX RIS
  22. 104. Chen YN, Zhou J, Kirkham HS, Witt EA, Jenness SM, Wall KM, Kamaleswaran R, Naimi AI, Siegler AJ. Understanding the Typology of PrEP Persistence Trajectories among Male PrEP Users in the U.S.. Open Forum Infectious Diseases. 2024; 11(11): ofae584. [ DOI · PubMed ] BibTeX RIS
  23. 103. Traeger MW, Krakower D, Mayer KH, Jenness SM, Marcus JL. Use of Doxycycline and Other Antibiotics as Bacterial Sexually Transmitted Infection Prophylaxis in a U.S. Sample of Primarily Gay and Bisexual Men. Sexually Transmitted Diseases. 2024; 51(12): 763–771. [ DOI · PubMed ] BibTeX RIS
  24. 102. Harrington KRV, Gandhi NR, Shah NS, Naidoo K, Auld SC, Andrews JR, Brust JCM, Lutchminarain K, Coe M, Willis F, Campbell A, Cohen T, Jenness SM, Waller L. The impact of COVID-19 national lockdowns on drug-resistant tuberculosis in KwaZulu-Natal, South Africa: a spatial analysis. Annals of Epidemiology. 2024; 97: 44–51. [ DOI · PubMed ] BibTeX RIS
  25. 101. Aguolu OG, Kiti MC, Nelson K, Liu CY, Sundaram M, Gramacho S, Jenness SM, Melegaro A, Sacoor C, Bardaji A, Macicame I, Jose A, Cavele N, Amosse F, Uamba M, Jamisse E, Tchavana C, Giovanni Maldonado Briones H, Jarquín C, Ajsivinac M, Pischel L, Ahmed N, Mohan VR, Srinivasan R, Samuel P, John G, Ellington K, Augusto Joaquim O, Zelaya A, Kim S, Chen H, Kazi M, Malik F, Yildirim I, Lopman B, Omer SB. Comprehensive Profiling of Social Mixing Patterns in Resource Poor Countries: A Mixed Methods Research Protocol. PLoS One. 2024; 19(6): e0301638. [ DOI · PubMed ] BibTeX RIS
  26. 100. Jenness SM, Wallrafen-Sam K, Schneider I, Kennedy S, Akiyama MJ, Spaulding AC. Dynamic Contact Networks of Residents of an Urban Jail in the Era of SARS-CoV-2. Epidemics. 2024; 47: 100772. [ DOI · PubMed ] BibTeX RIS
  27. 99. Traeger MW, Mayer KH, Krakower DS, Gitin S, Jenness SM, Marcus JL. Potential Impact of Doxycycline Post-Exposure Prophylaxis Prescribing Strategies on Incidence of Bacterial Sexually Transmitted Infections. Clinical Infectious Diseases. 2023; 82(2): 304–311. [ DOI · PubMed ] BibTeX RIS
  28. 98. Janulis P, Jenness SM, Risher K, Phillips G, Mustaski B, Birkett M. Substance Use and Variation in Sexual Partnership Rates among Young MSM and Young Transgender Women: Disaggregating Between and Within-Person Associations. Drug and Alcohol Dependence. 2023; 252: 110968. [ DOI · PubMed ] BibTeX RIS
  29. 97. Klumb C, Morris M, Goodreau SM, Jenness SM. Improving and Extending STERGM Approximations Based on Cross-Sectional Data and Tie Durations. Journal of Computational and Graphical Statistics. 2024; 33(1): 166–180. [ DOI · PubMed ] BibTeX RIS
  30. 96. Hamilton DT, Wang LY, Hoover KW, Smith DK, Delaney KP, Li J, Hoyte T, Jenness SM, Goodreau SM. Potential contribution of PrEP uptake by adolescents 15-17 years old to achieving the ‘Ending the HIV Epidemic’ incidence reduction goals in the US South. PLoS One. 2023; 18(11): e0288588. [ DOI · PubMed ] BibTeX RIS
  31. 95. Kiti MC, Aguolu OG, Zelaya A, Chen HY, Ahmed N, Batross J, Liu CY, Nelson KN, Jenness SM, Melegaro A, Ahmed F, Malik F, Omer SB, Lopman BA. Changing social contact patterns among US workers during the COVID-19 pandemic: April 2020 to December 2021. Epidemics. 2023; 45: 100727. [ DOI · PubMed ] BibTeX RIS
  32. 94. Kraft TS, Seabright E, Alami S, Jenness SM, Hooper P, Beheim B, Davis H, Cummings DK, Rodriguez DE, Gayuba MG, Miner E, de Lamballerie X, Inchauste L, Priet S, Trumble BC, Stieglitz J, Kaplan H, Gurven MD. Metapopulation Dynamics of SARS-CoV-2 Transmission in a Small-Scale Amazonian Society. PLoS Biology. 2023; 21(8): e3002108. [ DOI · PubMed ] BibTeX RIS
  33. 93. Janulis P, Goodreau SM, Morris M, Birkett M, Phillips G, Risher K, Mustanski B, Jenness SM. Partnership Types and Coital Frequency as Predictors of Gonorrhea and Chlamydia among Young MSM and Young Transgender Women. International Journal of STD & AIDS. 2023; 34(10): 694–701. [ DOI · PubMed ] BibTeX RIS
  34. 92. Mann LM, Sanchez T, Stephenson R, Sullivan PS, Jenness SM. The Impact of the COVID-19 Pandemic on Sexual Behavior and HIV Prevention and Treatment Services among U.S. Men Who Have Sex with Men in the Post-Lockdown Era. American Journal of Men’s Health. 2023; 17(2): 15579883231168602. [ DOI · PubMed ] BibTeX RIS
  35. 91. Hamilton DT, Hoover KW, Smith DK, Delaney KP, Wang LY, Li J, Hoyte T, Jenness SM, Goodreau SM. Achieving the ‘Ending the HIV Epidemic in the U.S.’ Incidence Reduction Goals among At-Risk Populations in the South. BMC Public Health. 2023; 23(1): 716. [ DOI · PubMed ] BibTeX RIS
  36. 90. Jones J, Jenness SM, Le Guillou A, Sullivan PS, Gift TL, Delaney KP, Chesson H. Estimated Number of Incident HIV Infections in Men Who Have Sex with Men Attributable to Gonorrhea and Chlamydial Infection, per Gonococcal or Chlamydial Infection, in the United States. Sexually Transmitted Diseases. 2023; 50(2): 83–85. [ DOI · PubMed ] BibTeX RIS
  37. 89. Aguolu OG, Willebrand K, Elharake JA, Qureshi HM, Kiti MC, Liu CY, Mesa AR, Nelson K, Jenness SM, Melegaro A, Ahmed F, Yildirim I, Malik FA, Lopman B, Omer SA. Factors Influence the Decision to Receive Seasonal Influenza Vaccination among US Corporate Non-Healthcare Workers. Human Vaccines & Immunotherapeutics. 2022; 18(6): e2122379. [ DOI · PubMed ] BibTeX RIS
  38. 88. Jenness SM, Le Guillou A, Lyles C, Bernstein KT, Krupinsky K, Enns EA, Sullivan PS, Delaney KP. The Role of HIV Partner Services in the Modern Biomedical HIV Prevention Era: A Network Modeling Study. Sexually Transmitted Diseases. 2022; 49(12): 801–807. [ DOI · PubMed ] BibTeX RIS
  39. 87. Chandra C, Morris M, Van Meter C, Goodreau SM, Sanchez T, Janulis P, Birkett M, Jenness SM. Comparing Sexual Network Mean Active Degree Measurement Metrics among Men Who Have Sex with Men. Sexually Transmitted Diseases. 2022; 49(12): 808–814. [ DOI · PubMed ] BibTeX RIS
  40. 86. Mann LM, Le Guillou A, Goodreau SM, Marcus JL, Sanchez T, Weiss KM, Jenness SM. Correlations Between Community-Level HIV Preexposure Prophylaxis Coverage and Individual-Level Sexual Behaviors among US Men Who Have Sex with Men. AIDS. 2022; 36(14): 2015–2023. [ DOI · PubMed ] BibTeX RIS
  41. 85. Maloney KM, Benkeser D, Sullivan PS, Kelley C, Sanchez T, Jenness SM. Sexual Mixing by Diagnosed HIV Status and Pre-Exposure Prophylaxis Use among Men Who Have Sex with Men: Stochastic Reclassification to Address Information Bias in Egocentric Network Data. Epidemiology. 2022; 33(6): 808–816. [ DOI · PubMed ] BibTeX RIS
  42. 84. Jones J, Le Guillou A, Gift TL, Chesson H, Delaney K, Lyles C, Berruti A, Sullivan PS, Jenness SM. Effect of Screening and Treatment for Gonorrhea and Chlamydia on HIV Incidence among Men Who Have Sex with Men in the United States: A Modeling Analysis. Sexually Transmitted Diseases. 2022; 49(10): 663–668. [ DOI · PubMed ] BibTeX RIS
  43. 83. Wheatley MM, Knowlton G, Kao SY, Jenness SM, Enns E. Cost-Effectiveness of Interventions to Improve HIV Pre-Exposure Prophylaxis Initiation, Adherence, and Persistence among Men Who Have Sex with Men. Journal of Acquired Immune Deficiency Syndrome. 2022; 90(1): 40–49. [ DOI · PubMed ] BibTeX RIS
  44. 82. Willebrand KS, Pischel L, Malik AA, Jenness SM, Omer SB. A Review of COVID-19 Transmission Dynamics and Clinical Outcomes on Cruise Ships Worldwide, January to October 2020. Eurosurveillance. 2022; 27(1): 2002113. [ DOI · PubMed ] BibTeX RIS
  45. 81. Goodreau SM, Maloney KM, Sanchez TH, Morris M, Janulis P, Jenness SM. A Behavioral Cascade of HIV Seroadaptation among US Men Who Have Sex with Men in the Era of PrEP and U=U. AIDS & Behavior. 2021; 25(12): 3933–43. [ DOI · PubMed ] BibTeX RIS
  46. 80. Le Guillou A, Buchbinder S, Scott H, Liu A, Havlir D, Scheer S, Jenness SM. Population Impact and Efficiency of Improvements to HIV PrEP Under Conditions of High ART Coverage among San Francisco Men Who Have Sex with Men. Journal of Acquired Immune Deficiency Syndrome. 2021; 88(4): 340–347. [ DOI · PubMed ] BibTeX RIS
  47. 79. Jenness SM, Willebrand KS, Malik AA, Lopman BA, Omer S. Dynamic Network Strategies for SARS-CoV-2 Control on a Cruise Ship. Epidemics. 2021; 37: 100488. [ DOI · PubMed ] BibTeX RIS
  48. 78. Chandra CL, Weiss KM, Kelley CF, Marcus JL, Jenness SM. Gaps in Screening of Sexually Transmitted Infections among Men Who Have Sex with Men during PrEP Care in the United States. Clinical Infectious Diseases. 2021; 73(7): e2261–69. [ DOI · PubMed · PDF ] BibTeX RIS
  49. 77. Weiss KM, Prasad P, Sanchez T, Goodreau SM, Jenness SM. Association Between HIV PrEP Indications and Use in a National Sexual Network Study of Men Who Have Sex with Men. Journal of the International AIDS Society. 2021; 24(10): e25826. [ DOI · PubMed ] BibTeX RIS
  50. 76. Liu CY, Berlin J, Kiti MC, Del Fava E, Grow A, Zagheni E, Melegaro A, Jenness SM, Omer S, Lopman B, Nelson N. Rapid Review of Social Contact Patterns During the COVID-19 Pandemic. Epidemiology. 2021; 32(6): 781–91. [ DOI · PubMed ] BibTeX RIS
  51. 75. Kiti MC, Aguola OG, Liu C, Mesa AR, Regina R, Woody M, Willebrand K, Couzens C, Bartelsmeyer T, Nelson KN, Jenness SM, Riley S, Melegaro A, Ahmed F, Malik F, Lopman BA, Omer SB. Social Contact Patterns among Employees in 3 U.S. Companies During Early Phases of the COVID-19 Pandemic, April to June 2020. Epidemics. 2021; 36: 100481. [ DOI · PubMed ] BibTeX RIS
  52. 74. Anderson EJ, Weiss KM, Morris M, Sanchez TH, Prasad P, Jenness SM. The HIV/STI Epidemic Potential for Dynamic Sexual Networks of Men Who Have Sex with Men in Atlanta and San Francisco. Epidemiology. 2021; 32(5): 681–89. [ DOI · PubMed ] BibTeX RIS
  53. 73. Jenness SM, Knowlton G, Smith DK, Marcus JL, Anderson EJ, Siegler AJ, Jones J, Sullivan PS, Enns E. A Decision Analytics Model to Optimize Investment in Interventions Targeting the HIV PrEP Cascade of Care. AIDS. 2021; 35(9): 1479–89. [ DOI · PubMed ] BibTeX RIS
  54. 72. Janulis P, Goodreau SM, Birkett M, Phillips G, Mustanski B, Jenness SM. Temporal Variation in One-Time Partnership Rates among Young Men Who Have Sex with Men and Transgender Women. Journal of Acquired Immune Deficiency Syndrome. 2021; 87(3): e214–e221. [ DOI · PubMed ] BibTeX RIS
  55. 71. Jenness SM, Le Guillou A, Chandra C, Mann L, Sanchez T, Westreich D, Marcus JL. Projected HIV and Bacterial STI Incidence Following COVID-Related Sexual Distancing and Clinical Service Interruption. Journal of Infectious Diseases. 2021; 223(6): 1019–28. [ DOI · PubMed ] BibTeX RIS
  56. 70. Lopman B, Liu CY, Le Guillou A, Handel A, Lash TL, Isakov AP, Jenness SM. A Model of COVID-19 Transmission and Control on University Campuses. Scientific Reports. 2021; 11(1): 5900. [ DOI · PubMed · Web App ] BibTeX RIS
  57. 69. Cassels S, Mwenda K, Biney A, Jenness SM. Is It the Timing? Short-Term Mobility and Coital Frequency in Agbogbloshie, Ghana. Archives of Sexual Behavior. 2021; 50(2): 589–600. [ DOI · PubMed ] BibTeX RIS
  58. 68. Maloney KM, Le Guillou A, Driggers R, Sarkar S, Anderson EA, Malik AA, Jenness SM. Projected Impact of Concurrently Available Long-Acting Injectable and Daily-Oral HIV Pre-Exposure Prophylaxis. Journal of Infectious Diseases. 2021; 223(1): 72–82. [ DOI · PubMed · PDF ] BibTeX RIS
  59. 67. Westreich D, Jenness SM, Marcus JL. To Contact Tracing… and Beyond!. Clinical Infectious Diseases. 2021; 72(4): 724–5. [ DOI · PubMed ] BibTeX RIS
  60. 66. Vermeer W, Hjorth A, Jenness SM, Brown CH, Wilensky U. Leveraging Modularity During Replication of High-Fidelity Models: Lessons from Replicating an Agent-Based Model for HIV Prevention. Journal of Artificial Societies and Social Simulation. 2020; 23(4): 7. [ DOI · PubMed ] BibTeX RIS
  61. 65. Jenness SM, Johnson JA, Hoover KW, Smith DK, Delaney K. Modeling an Integrated HIV Prevention and Care Continuum to Achieve the Ending the HIV Epidemic Goals. AIDS. 2020; 34(14): 2103–2113. [ DOI · PubMed · PDF ] BibTeX RIS
  62. 64. Nelson KN, Gandhi NR, Mathema B, Lopman BA, Brust JC, Auld SC, Ismail N, Omar SV, Brown RS, Allana S, Campbell A, Moodley P, Mlisana K, Shah NS, Jenness SM. Modeling Missing Cases and Transmission Links in Networks of Extensively Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa. American Journal of Epidemiology. 2020; 189(7): 735–745. [ DOI · PubMed · PDF ] BibTeX RIS
  63. 63. Jones J, Dominguez K, Stephenson R, Stekler J, Castel J, Mena L, Jenness SM, Siegler A, Sullivan PS. A Theoretically Based Mobile App to Increase Pre-Exposure Prophylaxis Uptake Among Men Who Have Sex with Men: Protocol for a Randomized Controlled Trial. Journal of Medical Internet Research, Research Protocols. 2020; 9(2): e16231. [ DOI · PubMed ] BibTeX RIS
  64. 62. Weiss KM, Prasad P, Ramaraju R, Zlotorzynska M, Jenness SM. Estimated Number of Men who have Sex with Men with Indications for HIV Pre-Exposure Prophylaxis in a National Sexual Network Study. Journal of Acquired Immune Deficiency Syndrome. 2020; 84(1): 10–17. [ DOI · PubMed ] BibTeX RIS
  65. 61. Vaz O, Ellingson MK, Weiss P, Jenness SM, Bardaji A, Bednarczyk RA, Omer SB. Mandatory Vaccination in Europe. Pediatrics. 2020; 145(2): e20190620. [ DOI · PubMed ] BibTeX RIS
  66. 60. Weiss KM, Goodreau SM, Morris M, Prasad P, Ramaraju R, Sanchez T, Jenness SM. Egocentric Sexual Networks of Men Who Have Sex with Men in the United States: Results from the ARTnet Study. Epidemics. 2020; 30: 100386. [ DOI · PubMed · PDF ] BibTeX RIS
  67. 59. Uong S, Rosenberg ES, Luisi N, Goodreau SM, Sullivan PS, Jenness SM. Assessing the Validity of Sexual Network Degree among Men Who Have Sex with Men using Prospective Cohort Data. Epidemiology. 2020; 31(2): 229–237. [ DOI · PubMed · PDF ] BibTeX RIS
  68. 58. Nelson KN, Jenness SM, Mathema B, Lopman BA, Auld SC, Shah NS, Brust JC, Ismail N, Omar SV, Brown TS, Allana S, Campbell A, Moodley P, Mlisana K, Gandhi NR. Social Mixing and Clinical Features Linked with Transmission in a Network of Extensively Drug-Resistant (XDR) Tuberculosis Cases in KwaZulu-Natal, South Africa. Clinical Infectious Diseases. 2020; 70(11): 2396–2402. [ DOI · PubMed ] BibTeX RIS
  69. 57. Weiss KM, Jones JS, Anderson EJ, Gift T, Chesson H, Bernstein K, Workowski K, Tuite A, Rosenberg ES, Sullivan PS, Jenness SM. Optimizing Coverage versus Frequency for Sexually Transmitted Infection Screening of Men Who Have Sex with Men. Open Forum Infectious Diseases. 2019; 6(10): ofz405. [ DOI · PubMed · PDF ] BibTeX RIS
  70. 56. Weiss KM, Jones J, Katz DA, Gift TL, Bernstein K, Workowski K, Rosenberg E, Jenness SM. Epidemiological Impact of Expedited Partner Therapy for Men Who Have Sex with Men: A Modeling Study. Sexually Transmitted Diseases. 2019; 46(11): 697–705. [ DOI · PubMed · PDF ] BibTeX RIS
  71. 55. Siegler A, Brock JB, Hurt CB, Ahlschlager L, Dominguez K, Kelley C, Jenness SM, Wilde G, Jameson S, Bailey-Herring G, Mena LA. Advancing PrEP Delivery: Protocol for a Randomized Controlled Trial for Use of ePrEP to Expand PrEP Access to Non-Urban Young MSM. Journal of Medical Internet Research, Research Protocols. 2019; 8(6): e13982. [ DOI · PubMed · PDF ] BibTeX RIS
  72. 54. Chapin-Bardales J, Rosenberg ES, Sullivan PS, Jenness SM, Paz-Bailey G. Trends in Number and Composition of Sex Partners among Men Who Have Sex with Men in the United States, National HIV Behavioral Surveillance, 2008–2014. Journal of Acquired Immune Deficiency Syndrome. 2019; 81(3): 257–265. [ DOI · PubMed ] BibTeX RIS
  73. 53. Hamilton D, Rosenberg ES, Jenness SM, Sullivan PS, Wang LY, Dunville RL, Barrios LC, Aslam M, Goodreau SM. Modeling the Joint Effects of Adolescent and Adult PrEP for Sexual Minority Males in the United States. PLoS One. 2019; 14(5): e0217314. [ DOI · PubMed ] BibTeX RIS
  74. 52. Cassels S, Jenness SM, Biney A. Coital Frequency and Male Concurrent partnerships During Pregnancy and Postpartum in Agbogbloshie, Ghana. AIDS & Behavior. 2019; 23(6): 1508–1517. [ DOI · PubMed ] BibTeX RIS
  75. 51. Jones J, Weiss K, Mermin J, Dietz P, Rosenberg ES, Gift T, Chesson H, Sullivan PS, Lyles C, Bernstein K, Jenness SM. Proportion of Incident HIV Cases among Men Who Have Sex with Men Attributable to Gonorrhea and Chlamydia: A Modeling Analysis. Sexually Transmitted Diseases. 2019; 46(6): 357–363. [ DOI · PubMed · PDF ] BibTeX RIS
  76. 50. Ebert CD, Astale T, Sata E, Zerihun M, Nute AW, Stewart AEP, Gessese D, Ayenew G, Ayele Z, Melak B, Chanyalew M, Gashaw B, Tadesse Z, Kelly E, Jenness SM, Nash SD. Population Coverage and Factors Associated with Participation Following a Mass Drug Administration of Azithromycin for Trachoma Elimination in Amhara, Ethiopia. Trop Med Int Health. 2019; 24(4): 493–501. [ DOI · PubMed ] BibTeX RIS
  77. 49. Jenness SM, Maloney K, Smith SK, Hoover KW, Rosenberg ES, Goodreau SM, Weiss KM, Liu AY, Rao D, Sullivan PS. Addressing Gaps in HIV Preexposure Prophylaxis Care to Reduce Racial Disparities in HIV Incidence in the United States. American Journal of Epidemiology. 2019; 188(4): 743–752. [ DOI · PubMed · PDF ] BibTeX RIS
  78. 48. Jenness SM, Weiss KM, Prasad P, Zlotorzynska M, Sanchez T. Bacterial STI Screening Rates by Symptomatic Status among Men Who Have Sex with Men in the United States: A Hierarchical Bayesian Analysis. Sexually Transmitted Diseases. 2019; 46(1): 25–30. [ DOI · PubMed · PDF · Web App ] BibTeX RIS
  79. 47. Hamilton DT, Goodreau SM, Jenness SM, Sullivan PS, Wang LY, Dunville RL, Barrios LC, Rosenberg ES. Potential Impact of HIV Preexposure Prophylaxis Among Black and White Adolescent Sexual Minority Males: A Modeling Study. American Journal of Public Health. 2018; 108(S4): S284–S291. [ DOI · PubMed ] BibTeX RIS
  80. 46. Goldstein ND, Jenness SM, Tuttle D, Power M, Paul DA, Eppes SC. Evaluating a neonatal intensive care unit HRSA surveillance programme using agent-based network modeling. Journal of Hospital Infection. 2018; 100(3): 337–343. [ DOI · PubMed · PDF ] BibTeX RIS
  81. 45. Jones J, Guest JL, Sullivan PS, Sales J, Jenness SM, Kramer M. The Association Between Monetary and Sexual Delay Discounting and Risk Sexual Behavior in an Online Sample of Men Who Have Sex with Men. AIDS Care. 2018; 30(7): 844–852. [ DOI · PubMed ] BibTeX RIS
  82. 44. Jones J, Guest JL, Sullivan PS, Kramer M, Jenness SM, Sales J. Concordance Between Monetary and Sexual Delay Discounting in Men Who Have Sex with Men. Sexual Health. 2018; 15(3): 214–222. [ DOI · PubMed ] BibTeX RIS
  83. 43. Luo W, Katz DA, Hamilton DT, McKenney J, Jenness SM, Goodreau SM, Stekler JD, Rosenberg ES, Sullivan PS. Development of an Agent-Based Model to Investigate the Impact of HIV Self-Testing Programs for Men Who Have Sex with Men in Atlanta and Seattle. Journal of Medical Internet Research, Public Health Surveillance. 2018; 4(2): e58. [ DOI · PubMed ] BibTeX RIS
  84. 42. Jenness SM, Weiss KM, Goodreau SM, Rosenberg E, Gift T, Chesson H, Hoover KW, Smith DK, Liu AY, Sullivan P. Moving Forward with Treatment of Gonorrhea for Users of HIV Preexposure Prophylaxis Given the Threat of Antimicrobial Resistance. Clinical Infectious Diseases. 2018; 67(1): 155–156. [ DOI · PubMed ] BibTeX RIS
  85. 41. Jenness SM, Goodreau SM, Morris M. EpiModel: An R Package for Mathematical Modeling of Infectious Disease over Networks. Journal of Statistical Software. 2018; 84(8): 1-47. [ DOI · PubMed · PDF ] BibTeX RIS
  86. 40. Goodreau SM, Hamilton DT, Jenness SM, Sullivan PS, Valencia RK, Wang LY, Dunville RL, Barrios LC, Rosenberg ES. Targeting Strategies for HIV Pre-Exposure Prophylaxis among Adolescent Sexual Minority Males in Higher Prevalence Areas of the United States: A Modeling Study. Journal of Adolescent Health. 2018; 62(3): 311–319. [ DOI · PubMed ] BibTeX RIS
  87. 39. Jenness SM, Weiss KM, Goodreau SM, Rosenberg E, Gift T, Chesson H, Hoover KW, Smith DK, Liu AY, Sullivan P. Incidence of Gonorrhea and Chlamydia Following HIV Preexposure Prophylaxis among Men Who Have Sex with Men. Clinical Infectious Diseases. 2017; 65(5): 712–18. [ DOI · PubMed · PDF ] BibTeX RIS
  88. 38. Goodreau SM, Rosenberg ES, Jenness SM, Luisi N, Stansfield SE, Millett G, Sullivan P. Sources of Racial Disparities in HIV Prevalence in Men Who Have Sex with Men in Atlanta, GA: A Modeling Study. Lancet HIV. 2017; 4(7): e311–e320. [ DOI · PubMed · PDF · Web App ] BibTeX RIS
  89. 37. Neaigus A, Reilly KH, Jenness SM, Hagan H, Wendel T, Gelpi-Acosta C, Marshall DM. Trends in HIV and HCV Risk Behaviors and Prevalent Infection among People Who Inject Drugs in New York City, 2005–2012. Journal of Acquired Immune Deficiency Syndrome. 2017; 75 Suppl 3: S325–S332. [ DOI · PubMed ] BibTeX RIS
  90. 36. Cassels S, Jenness SM, Biney AA, Dodoo FN. Geographic Mobility and Potential Bridging for Sexually Transmitted Infections in Agbogbloshie, Ghana. Social Science and Medicine. 2017; 184: 27–39. [ DOI · PubMed ] BibTeX RIS
  91. 35. Gwadz M, Cleland C, Perlman D, Hagan H, Jenness SM, Leonard N, Ritchie A, Kutnick A. Public Health Benefit of Peer-Referral Strategies for Detecting Undiagnosed HIV Infection among High-Risk Heterosexuals in New York City. Journal of Acquired Immune Deficiency Syndrome. 2017; 74(5): 499–507. [ DOI · PubMed ] BibTeX RIS
  92. 34. Jenness SM, Sharma A, Goodreau SM, Rosenberg E, Hoover KW, Smith DK, Sullivan P. Individual HIV Risk versus Population Impact of Risk Compensation after Preexposure Prophylaxis Initiation among US Men Who Have Sex with Men. PLoS One. 2017; 12(1): e0169484. [ DOI · PubMed ] BibTeX RIS
  93. 33. Jenness SM, Goodreau SM, Rosenberg E, Beylerian EN, Hoover KW, Smith DK, Sullivan PS. Impact of CDC’s HIV Pre-Exposure Prophylaxis Guidelines among MSM in the United States. Journal of Infectious Diseases. 2016; 214(12): 1800–1807. [ DOI · PubMed · Web App ] BibTeX RIS
  94. 32. Jenness SM, Goodreau SM, Morris M, Cassels S. Effectiveness of Combination Packages for HIV-1 Prevention in Sub-Saharan Africa Depends on Partnership Network Structure. Sexually Transmitted Infections. 2016; 92: 619–624. [ DOI · PubMed · PDF ] BibTeX RIS
  95. 31. Reilly KH, Neaigus A, Shepard CW, Cutler BH, Sweeney MM, Jenness SM, Wendel T, Marshall DM, Hagan H. It’s Never Just HIV: Exposure to an HIV Prevention Media Campaign and Behavior Change Among Men Who Have Sex with Men Participating in the National HIV Behavioral Surveillance System in New York City. LGBT Health. 2016; 3(4): 314–18. [ DOI · PubMed ] BibTeX RIS
  96. 30. Reilly KH, Neaigus A, Jenness SM, Wendel T, Marshall DM, Hagan H. Experiences of Discrimination and HIV Risk Among Men Who Have Sex with Men in New York City. American Journal of Men’s Health. 2016; 10(6): 505–514. [ DOI · PubMed ] BibTeX RIS
  97. 29. Neaigus A, Jenness SM, Reilly KH, Youm Y, Hagan H, Wendel T, Gelpi-Acosta C. Community Sexual Bridging Among Heterosexuals at High-Risk of HIV in New York City. AIDS & Behavior. 2016; 20(4): 722–36. [ DOI · PubMed ] BibTeX RIS
  98. 28. Gwadz M, Cleland CM, Jenness SM, Silverman E, Hagan H, Ritchie AS, Leonard NR, McCright-Gill T, Martinez B, Swain Q, Kutnick A, Sherpa D. Exploring Factors Associated with Recent HIV Testing among Heterosexuals at High Risk for HIV Infections Recruited with Venue-Based Sampling. Journal of AIDS & Clinical Research. 2016; 7:2: 1000544. [ DOI · PubMed ] BibTeX RIS
  99. 27. Jenness SM, Biney AA, Ampofo WK, Nii-Amoo Dodoo F, Cassels S. Minimal Coital Dilution in Accra, Ghana. Journal of Acquired Immune Deficiency Syndrome. 2015; 69: 85–91. [ DOI · PubMed · PDF ] BibTeX RIS
  100. 26. Gwadz M, Cleland CM, Hagan H, Jenness SM, Kutnick A, Leonard NR, Applegate E, Ritchie AS, Banfield A, Belkin M, Cross B, Del Olmo M, Ha K, Martinez BY, McCright-Gill T, Swain QL, Perlman DC, Kurth AE. Strategies to Uncover Undiagnosed HIV Infection among Heterosexuals at High Risk and Link Them to HIV Care with High Retention: a ‘Seek, Test, Treat, and Retain’ Study. BMC Public Health. 2015; 15(1): 481. [ DOI · PubMed ] BibTeX RIS
  101. 25. Jenness SM, Neaigus A, Wendel T, Gelp-Acosta C, Hagan H. Spatial Recruitment Bias in Respondent-Driven Sampling: Implications for HIV Prevalence Estimation in Urban Heterosexuals. AIDS & Behavior. 2014; 18(12): 2366–73. [ DOI · PubMed · PDF ] BibTeX RIS
  102. 24. Cassels S, Jenness SM, Khanna AS. Conceptual Framework and Research Methods for Migration and HIV Transmission Dynamics. AIDS & Behavior. 2014; 18(12): 2302–13. [ DOI · PubMed · PDF ] BibTeX RIS
  103. 23. Neaigus A, Reilly KH, Jenness SM, Wendel T, Marshall DM, Hagan H. Multi-level Risk Factors for Greater HIV Infection of Black Men Who Have Sex with Men in New York City. Sexually Transmitted Diseases. 2014; 41(7): 433–9. [ DOI · PubMed ] BibTeX RIS
  104. 22. Reilly KH, Neaigus A, Jenness SM, Wendel T, Marshall DM, Hagan H. Factors Associated with Recent HIV Testing among Men Who Have Sex with Men in New York City. AIDS & Behavior. 2014; 18(S3): 297–304. [ DOI · PubMed ] BibTeX RIS
  105. 21. Cassels S, Jenness SM, Biney AA, Ampofo WK, Dodoo FN. Migration, Sexual Networks, and HIV in Agbogbloshie, Ghana. Demographic Research. 2014; 31(28): 861–88. [ DOI · PubMed · PDF ] BibTeX RIS
  106. 20. Reilly KH, Neaigus A, Jenness SM, Wendel T, Hagan H, Marshall DM, Murrill CS, Koblin BA. Trends in HIV Prevalence and Risk Behavior Among Men Who Have Sex with Men in New York City, 2004–11. AIDS Education & Prevention. 2014; 26(2): 134–43. [ DOI · PubMed ] BibTeX RIS
  107. 19. Beletsky L, Heller D, Jenness SM, Neaigus A, Gelpi-Acosta C, Hagan H. Syringe Access, Syringe Sharing, and Police Encounters among People who Inject Drugs in New York City: A Community-Level Perspective. International Journal of Drug Policy. 2014; 25(1): 105–11. [ DOI · PubMed ] BibTeX RIS
  108. 18. Neaigus A, Reilly KH, Jenness SM, Hagan H, Wendel T, Gelpi-Acosta C. Dual HIV Risk: Receptive Syringe Sharing and Unprotected Sex Among HIV-Negative Injection Drug Users in New York City. AIDS & Behavior. 2013; 17(7): 2501–9. [ DOI · PubMed ] BibTeX RIS
  109. 17. Reilly KH, Neaigus A, Jenness SM, Hagan H, Wendel T, Gelp-Acosta C. High HIV Prevalence Among Low-Income, Black Women in New York City with Self-Reported HIV Negative and Unknown Status. Journal of Women’s Health. 2013; 22(9): 745–54. [ DOI · PubMed ] BibTeX RIS
  110. 16. Neaigus A, Jenness SM, Hagan H, Murrill CS, Wendel T. Reciprocal Sex Partner Concurrency and Sexually Transmitted Diseases among Heterosexuals at High-Risk of HIV Infection. Journal of Urban Health. 2013; 90(5): 902–14. [ DOI · PubMed ] BibTeX RIS
  111. 15. Cassels S, Manhart L, Jenness SM, Morris M. Short-term Mobility and Increased Partnership Concurrency among Men in Zimbabwe. PLoS One. 2013; 8(6): e66342. [ DOI · PubMed · PDF ] BibTeX RIS
  112. 14. Jenness SM, Myers J, Neaigus A, Lulek J, Navejas M, Raj-Singh S. Delayed Entry into HIV Medical Care after HIV Diagnosis: Risk Factors and Research Methods. AIDS Care. 2012; 24(10): 1240–8. [ DOI · PubMed · PDF ] BibTeX RIS
  113. 13. Bertolli J, Shouse RL, Beer L, Valverde E, Fagan J, Jenness SM, Wogayehu A, Johnson C, Neaigus A, Hillman D, Courogen M, Brady KA, Bolden B. Using HIV Surveillance Data to Monitor Missed Opportunities for Linkage and Engagement in HIV Medical Care. Open AIDS Journal. 2012; 6(Supp 1): 131–41. [ DOI · PubMed ] BibTeX RIS
  114. 12. Neaigus A, Jenness SM, Hagan H, Murrill CS, Torian LV, Wendel T, Gelpi-Acosta C. Estimating HIV Incidence and the Correlates of Infection in Venue-Recruited Men Who Have Sex with Men in New York City. AIDS & Behavior. 2012; 16(3): 516–24. [ DOI · PubMed ] BibTeX RIS
  115. 11. Jenness SM, Neaigus A, Hagan H, Wendel T, Gelpi-Acosta C, Murrill CS. Recruitment-Adjusted Estimates of HIV Prevalence and Risk among Men Who Have Sex with Men: Effects of Weighting Venue-Based Sampling Data. Public Health Reports. 2011; 126(5): 635–42. [ DOI · PubMed · PDF ] BibTeX RIS
  116. 10. Gelpi-Acosta C, Hagan H, Jenness SM, Wendel T, Neaigus A. Sexual and Injection-Related Risk in Puerto Rican-Born Injection Drug Users Living in New York City: a Mixed-Methods Analysis. Harm Reduction Journal. 2011; 8(1): 28. [ DOI · PubMed · PDF ] BibTeX RIS
  117. 9. Jenness SM, Kobrak P, Wendel T, Neaigus A, Murrill CS, Hagan H. Patterns of Exchange Sex among High-Risk Men and Women. Journal of Urban Health. 2011; 88(2): 329–41. [ DOI · PubMed ] BibTeX RIS
  118. 8. Jenness SM, Begier E, Neaigus A, Murrill CS, Wendel T, Hagan H. Unprotected Anal Intercourse and Sexually Transmitted Diseases in High-Risk Heterosexual Women. American Journal of Public Health. 2011; 101(4): 745–50. [ DOI · PubMed · PDF ] BibTeX RIS
  119. 7. Smith BD, Teshale E, Jewett A, Weinbaum CM, Neaigus A, Hagan H, Jenness SM, Melville SK, Burt R, Thiede H, Al-Tayyib A, Pannala PR, Oster AM, Finlayson T, Bowles KE, DiNenno E. Performance of Pre-Market Rapid Hepatitis C Virus Antibody Assays in Four National HIV Behavioral Surveillance System Sites. Clinical Infectious Diseases. 2011; 53(8): 780–86. [ DOI · PubMed · PDF ] BibTeX RIS
  120. 6. Jenness SM, Neaigus A, Murrill CS, Gelpi-Acosta C, Wendel T, Hagan H. Estimated HIV Incidence among High-Risk Heterosexuals in New York City, 2007. Journal of Acquired Immune Deficiency Syndrome. 2011; 56(2): 193–97. [ DOI · PubMed · PDF ] BibTeX RIS
  121. 5. Jenness SM, Hagan H, Liu KL, Wendel T, Murrill CS. Continuing HIV Risk in New York City Injection Drug Users: The Association of Syringe Source and Syringe Sharing. Substance Use & Misuse. 2011; 46(2-3): 192–200. [ DOI · PubMed · PDF ] BibTeX RIS
  122. 4. Jenness SM, Hagan H, Wendel T, Murrill CS, Neaigus A, Gelpi-Acosta C. Reconsidering the Internet as an HIV/STD Risk for Men Who Have Sex with Men. AIDS & Behavior. 2010; 14(6): 1353–61. [ DOI · PubMed · PDF ] BibTeX RIS
  123. 3. Hagan H, Jenness SM, Wendel T, Murrill CS, Neaigus A, Gelpi-Acosta C. Herpes Simplex Virus Type 2 Associated with HIV Infection among New York Heterosexuals Living in High-Risk Areas. International Journal of STD & AIDS. 2010; 21(8): 580–3. [ DOI · PubMed · PDF ] BibTeX RIS
  124. 2. Jenness SM, Neaigus A, Hagan H, Murrill CS, Wendel T. HIV Infection and Sexual Partnerships between Injection Drug Users and Non-Injectors. AIDS Patient Care & STDS. 2010; 24(3): 175–81. [ DOI · PubMed · PDF ] BibTeX RIS
  125. 1. Jenness SM, Murrill CS, Liu KL, Wendel T, Begier E, Hagan H. Missed Opportunities for HIV Testing among High-Risk Heterosexuals. Sexually Transmitted Diseases. 2009; 36(11): 704–10. [ DOI · PubMed · PDF ] BibTeX RIS