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<title>Samuel Jenness: News</title>
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<description>News from the EpiModel Research Lab: new publications, grants, and activities in infectious disease epidemiology.</description>
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<lastBuildDate>Tue, 28 Apr 2026 00:00:00 GMT</lastBuildDate>
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  <title>New paper (Gandhi): Casual Contact in Drug-Resistant TB Transmission</title>
  <link>https://samueljenness.org/news/2026-04-28-casual-contact-tb.html</link>
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<p>New paper led by Neel Gandhi in the <em>American Journal of Respiratory and Critical Care Medicine</em>: <em>Role of Casual Contact in Drug-Resistant Tuberculosis Transmission: A Molecular Epidemiology Study</em>. Using whole-genome sequencing of second-line drug-resistant TB in KwaZulu-Natal, South Africa, casual contact in community locations accounted for roughly half of transmission among genotypic clusters.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/42089682/">PubMed</a> · <a href="https://doi.org/10.1093/ajrccm/aamag140">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2026-04-28-casual-contact-tb.html</guid>
  <pubDate>Tue, 28 Apr 2026 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Traeger): Long-Acting Injectable Cabotegravir PrEP in Practice</title>
  <link>https://samueljenness.org/news/2026-04-15-cab-la-prep.html</link>
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<p>New paper led by Michael Traeger in <em>JAIDS</em>: <em>Long-Acting Injectable Cabotegravir HIV PrEP Uptake, Adherence, and Persistence in Two Large US Integrated Healthcare Systems</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/42150757/">PubMed</a> · <a href="https://doi.org/10.1097/QAI.0000000000003889">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2026-04-15-cab-la-prep.html</guid>
  <pubDate>Wed, 15 Apr 2026 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Anderson): Predicting High One-Time Partnership Rate Among MSM</title>
  <link>https://samueljenness.org/news/2026-03-01-partnerships-msm.html</link>
  <description><![CDATA[ 
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<p>New paper led by Emeli Anderson in <em>AIDS and Behavior</em>: <em>Predictive Models to Identify Factors Associated with a High One-Time Sexual Partnership Rate among U.S. Men Who Have Sex with Men</em>.</p>
<p><a href="https://doi.org/10.1007/s10461-026-05107-4">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2026-03-01-partnerships-msm.html</guid>
  <pubDate>Sun, 01 Mar 2026 00:00:00 GMT</pubDate>
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  <title>New Merck-funded study on monthly HIV PrEP</title>
  <link>https://samueljenness.org/news/2026-02-01-monthly-prep.html</link>
  <description><![CDATA[ 
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<p>New industry-funded study: <em>Monthly HIV Pre-Exposure Prophylaxis Preferences among U.S. Men Who Have Sex with Men</em> (Merck &amp; Co.). Modeling the population-impact of a monthly HIV PrEP formulation within the daily oral and injectable landscape.</p>



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  <category>grant</category>
  <guid>https://samueljenness.org/news/2026-02-01-monthly-prep.html</guid>
  <pubDate>Sun, 01 Feb 2026 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Harrington): Social Network Analysis of University COVID-19 Contact Tracing</title>
  <link>https://samueljenness.org/news/2026-01-15-university-contact-tracing-sna.html</link>
  <description><![CDATA[ 
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<p>New paper led by Kristin Harrington in <em>Public Health</em>: <em>The Application of Social Network Analysis to Examine COVID-19 Contact Tracing Networks in a University Setting</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/41604913/">PubMed</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2026-01-15-university-contact-tracing-sna.html</guid>
  <pubDate>Thu, 15 Jan 2026 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Nelson): Social Behavior for Infectious Disease in Four LMICs</title>
  <link>https://samueljenness.org/news/2025-10-15-social-lmics.html</link>
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<p>New paper led by Kristin Nelson in <em>Nature Communications</em>: <em>Characterizing Social Behavior Relevant for Infectious Disease Transmission in Four Low- and Middle-Income Countries, 2021-2023</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/41168147/">PubMed</a> · <a href="https://doi.org/10.1038/s41467-025-64850-9">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2025-10-15-social-lmics.html</guid>
  <pubDate>Wed, 15 Oct 2025 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Jones): HealthMindr PrEP RCT</title>
  <link>https://samueljenness.org/news/2025-08-12-healthmindr.html</link>
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<p>New paper led by Jeb Jones in <em>JAIDS</em>: <em>Randomized Controlled Trial of a HIV Prevention App to Increase Pre-exposure Prophylaxis Uptake among Gay and Bisexual Men Who Have Sex with Men in the United States: The HealthMindr PrEP Study</em>. The intervention app increased the rate of PrEP initiation relative to a control app, with the strongest effect among men with PrEP indications at baseline.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/40828543/">PubMed</a> · <a href="https://doi.org/10.1097/QAI.0000000000003747">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2025-08-12-healthmindr.html</guid>
  <pubDate>Tue, 12 Aug 2025 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Onwubiko): Optimizing HIV Partner Services among MSM Living with HIV</title>
  <link>https://samueljenness.org/news/2025-07-01-partner-services-plwh.html</link>
  <description><![CDATA[ 
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<p>New paper led by Udodirim Onwubiko in <em>Sexually Transmitted Diseases</em>: <em>Optimizing HIV Partner Services for Gay, Bisexual and Other Men Who Have Sex with Men Previously Diagnosed with HIV: A Modeling Study</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/40489800/">PubMed</a> · <a href="https://doi.org/10.1097/OLQ.0000000000002167">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2025-07-01-partner-services-plwh.html</guid>
  <pubDate>Tue, 01 Jul 2025 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Onwubiko): Depression at PrEP Initiation and PrEP Care Engagement</title>
  <link>https://samueljenness.org/news/2025-06-15-depression-prep-engagement.html</link>
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<p>New paper led by Udodirim Onwubiko in <em>JAIDS</em>: <em>Impact of Depression at HIV PrEP Initiation on Sustained PrEP Care Engagement among US Gay and Bisexual Men</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/40373280/">PubMed</a> · <a href="https://doi.org/10.1097/QAI.0000000000003698">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2025-06-15-depression-prep-engagement.html</guid>
  <pubDate>Sun, 15 Jun 2025 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Violette): OTC HIV PrEP Support Among Transfeminine People</title>
  <link>https://samueljenness.org/news/2025-05-15-otc-prep-tf.html</link>
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<p>New paper led by L.R. Violette in <em>JAMA Network Open</em>: <em>Support for Over-the-Counter HIV Preexposure Prophylaxis among Transfeminine People</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/40833698/">PubMed</a> · <a href="https://doi.org/10.1001/jamanetworkopen.2025.27800">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2025-05-15-otc-prep-tf.html</guid>
  <pubDate>Thu, 15 May 2025 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Wallrafen-Sam): Responsive Vaccination Decisions and SARS-CoV-2 Spread</title>
  <link>https://samueljenness.org/news/2025-04-20-responsive-vaccination.html</link>
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<p>New paper led by Karina Wallrafen-Sam in <em>Epidemics</em>: <em>Modelling the Interplay Between Responsive Individual Vaccination Decisions and the Spread of SARS-CoV-2</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/40318563/">PubMed</a> · <a href="https://doi.org/10.1016/j.epidem.2025.100831">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2025-04-20-responsive-vaccination.html</guid>
  <pubDate>Sun, 20 Apr 2025 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Liu): COVID-19 Vaccination and Changes in Contact Patterns</title>
  <link>https://samueljenness.org/news/2025-04-01-covid-vaccination-contact.html</link>
  <description><![CDATA[ 
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<p>New paper led by Carol Liu in <em>Epidemics</em>: <em>The Effect of COVID-19 Vaccination on Change in Contact and Implications for Transmission</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/40300469/">PubMed</a> · <a href="https://doi.org/10.1016/j.epidem.2025.100827">DOI</a></p>



 ]]></description>
  <category>paper</category>
  <guid>https://samueljenness.org/news/2025-04-01-covid-vaccination-contact.html</guid>
  <pubDate>Tue, 01 Apr 2025 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Schneider): SARS-CoV-2 Prevention Interventions in Jails</title>
  <link>https://samueljenness.org/news/2025-02-15-jail-sarscov2-interventions.html</link>
  <description><![CDATA[ 
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<p>New paper led by Isaac Schneider in <em>Infectious Disease Modelling</em>: <em>Interventions for SARS-CoV-2 Prevention among Jailed Adults: A Network-Based Modeling Analysis</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/40027595/">PubMed</a> · <a href="https://doi.org/10.1016/j.idm.2025.02.001">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2025-02-15-jail-sarscov2-interventions.html</guid>
  <pubDate>Sat, 15 Feb 2025 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Traeger): Real-World Doxy-PEP and Bacterial STIs</title>
  <link>https://samueljenness.org/news/2025-01-15-doxy-pep-realworld.html</link>
  <description><![CDATA[ 
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<p>New paper led by Michael Traeger in <em>JAMA Internal Medicine</em>: <em>Doxycycline Postexposure Prophylaxis and Bacterial Sexually Transmitted Infections among Individuals Using HIV Preexposure Prophylaxis</em>. A real-world cohort study of doxy-PEP uptake and bacterial STI incidence among PrEP users, complementing our earlier modeling of doxy-PEP prescribing strategies.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/39761062/">PubMed</a> · <a href="https://doi.org/10.1001/jamainternmed.2024.7186">DOI</a></p>



 ]]></description>
  <category>paper</category>
  <guid>https://samueljenness.org/news/2025-01-15-doxy-pep-realworld.html</guid>
  <pubDate>Wed, 15 Jan 2025 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Jenness): Dynamic Contact Networks of Residents of an Urban Jail in the Era of SARS-CoV-2</title>
  <link>https://samueljenness.org/news/2024-11-15-jail-networks.html</link>
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<p>New paper in <em>Epidemics</em>: <em>Dynamic Contact Networks of Residents of an Urban Jail in the Era of SARS-CoV-2</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/38776713/">PubMed</a> · <a href="https://doi.org/10.1016/j.epidem.2024.100772">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2024-11-15-jail-networks.html</guid>
  <pubDate>Fri, 15 Nov 2024 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Onwubiko): Sexual Stigma and Mental Distress in the PrEP Cascade</title>
  <link>https://samueljenness.org/news/2024-10-15-stigma-prep-cascade.html</link>
  <description><![CDATA[ 
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<p>New paper led by Udodirim Onwubiko in <em>Social Science &amp; Medicine</em>: <em>Individual and Joint Associations of Sexual Stigma and Mental Distress with PrEP Uptake, Adherence and Persistence among US Gay and Bisexual Men</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/39541830/">PubMed</a> · <a href="https://doi.org/10.1016/j.socscimed.2024.117493">DOI</a></p>



 ]]></description>
  <category>paper</category>
  <guid>https://samueljenness.org/news/2024-10-15-stigma-prep-cascade.html</guid>
  <pubDate>Tue, 15 Oct 2024 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Onwubiko): Sexual Stigma, Poverty, and Mental Health among MSM</title>
  <link>https://samueljenness.org/news/2024-09-15-stigma-poverty-mental-health.html</link>
  <description><![CDATA[ 
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<p>New paper led by Udodirim Onwubiko in <em>PLOS Mental Health</em>: <em>Exploring the Intersections of Sexual Stigma, Poverty and Mental Health in HIV-Negative Gay, Bisexual and Other Men Who Have Sex with Men in the United States</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/41661778/">PubMed</a> · <a href="https://doi.org/10.1371/journal.pmen.0000212">DOI</a></p>



 ]]></description>
  <category>paper</category>
  <guid>https://samueljenness.org/news/2024-09-15-stigma-poverty-mental-health.html</guid>
  <pubDate>Sun, 15 Sep 2024 00:00:00 GMT</pubDate>
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<item>
  <title>New paper (Harrington): COVID-19 Lockdowns and Drug-Resistant TB in KwaZulu-Natal</title>
  <link>https://samueljenness.org/news/2024-08-01-covid-lockdowns-tb.html</link>
  <description><![CDATA[ 
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<p>New paper led by Kristin Harrington in <em>Annals of Epidemiology</em>: <em>The Impact of COVID-19 National Lockdowns on Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa: A Spatial Analysis</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/39038747/">PubMed</a> · <a href="https://doi.org/10.1016/j.annepidem.2024.07.044">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2024-08-01-covid-lockdowns-tb.html</guid>
  <pubDate>Thu, 01 Aug 2024 00:00:00 GMT</pubDate>
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  <title>New R01 funded: SILOS</title>
  <link>https://samueljenness.org/news/2024-07-01-silos.html</link>
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<p>Received Site PI role on the new NIH-funded <em>SILOS: Structural Inequities across Layers of Social-Context as Drivers of HIV and Substance Use</em> (<a href="https://reporter.nih.gov/">R01 DA061247</a>), studying social and structural factors in HIV transmission and substance use among young MSM and transgender women.</p>



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  <category>grant</category>
  <guid>https://samueljenness.org/news/2024-07-01-silos.html</guid>
  <pubDate>Mon, 01 Jul 2024 00:00:00 GMT</pubDate>
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<item>
  <title>New R21 funded: OFFSCRIPT (Over-the-Counter PrEP)</title>
  <link>https://samueljenness.org/news/2024-05-15-offscript.html</link>
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<p>Received Site PI role on the new NIH-funded <em>Over-the-Counter PrEP: Acceptability, Feasibility, and Potential Impact of Access Without a Prescription</em> (<a href="https://reporter.nih.gov/">R21 MH136855</a>). Evaluates the feasibility and impact of removing the need for a PrEP prescription.</p>



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  <category>grant</category>
  <guid>https://samueljenness.org/news/2024-05-15-offscript.html</guid>
  <pubDate>Wed, 15 May 2024 00:00:00 GMT</pubDate>
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<item>
  <title>New methods paper: Extending STERGM Approximations</title>
  <link>https://samueljenness.org/news/2024-03-01-stergm-approximations.html</link>
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<p>New methods paper in the <em>Journal of Computational and Graphical Statistics</em>: <em>Improving and Extending STERGM Approximations Based on Cross-Sectional Data and Tie Durations</em>. Methods that underpin efficient dynamic-network simulation in EpiModel.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/38455738/">PubMed</a> · <a href="https://doi.org/10.1080/10618600.2023.2233593">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2024-03-01-stergm-approximations.html</guid>
  <pubDate>Fri, 01 Mar 2024 00:00:00 GMT</pubDate>
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  <title>New paper (Traeger): Doxycycline PEP Prescribing Strategies on STI Incidence</title>
  <link>https://samueljenness.org/news/2023-11-20-doxy-pep.html</link>
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<p>New paper led by Michael Traeger in <em>Clinical Infectious Diseases</em>: <em>Potential Impact of Doxycycline Postexposure Prophylaxis Prescribing Strategies on Incidence of Bacterial Sexually Transmitted Infections</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/37595139/">PubMed</a> · <a href="https://doi.org/10.1093/cid/ciad488">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2023-11-20-doxy-pep.html</guid>
  <pubDate>Mon, 20 Nov 2023 00:00:00 GMT</pubDate>
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  <title>New UG3 funded: LITE Cohort</title>
  <link>https://samueljenness.org/news/2023-09-15-lite-cohort.html</link>
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<p>Received new NIH award for the <em>LITE Cohort to Identify Determinants of Viral Suppression in MSM and Transfeminine Individuals Living with HIV</em> (<a href="https://reporter.nih.gov/">UG3 AI176853</a>). A mixed-methods web-based cohort study investigating drivers of HIV viral non-suppression and novel approaches to VL monitoring and treatment.</p>



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  <category>grant</category>
  <guid>https://samueljenness.org/news/2023-09-15-lite-cohort.html</guid>
  <pubDate>Fri, 15 Sep 2023 00:00:00 GMT</pubDate>
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  <title>New CDC U38 funded: CIDMATH Center</title>
  <link>https://samueljenness.org/news/2023-09-01-cidmath.html</link>
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<p>Received new CDC award for the <em>Emory Center for Infectious Disease Modeling &amp; Analytics and Training Hub</em> (CIDMATH; CDC U38 75279). The Center will facilitate rapid understanding of epidemiological situations to guide public health decision-making.</p>



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  <category>grant</category>
  <guid>https://samueljenness.org/news/2023-09-01-cidmath.html</guid>
  <pubDate>Fri, 01 Sep 2023 00:00:00 GMT</pubDate>
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  <title>New paper (Janulis): Partnership Types and Coital Frequency as STI Predictors</title>
  <link>https://samueljenness.org/news/2023-06-01-partnership-coital-sti.html</link>
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<p>New paper led by Patrick Janulis in the <em>International Journal of STD &amp; AIDS</em>: <em>Partnership Types and Coital Frequency as Predictors of Gonorrhea and Chlamydia among Young MSM and Young Transgender Women</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/37146303/">PubMed</a> · <a href="https://doi.org/10.1177/09564624231173728">DOI</a></p>



 ]]></description>
  <category>paper</category>
  <guid>https://samueljenness.org/news/2023-06-01-partnership-coital-sti.html</guid>
  <pubDate>Thu, 01 Jun 2023 00:00:00 GMT</pubDate>
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  <title>New paper (Mann): COVID-19 Pandemic Impact on MSM Sexual Behavior and HIV Services</title>
  <link>https://samueljenness.org/news/2023-04-15-covid-msm-services.html</link>
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<p>New paper led by Laura Mann in the <em>American Journal of Men’s Health</em>: <em>The Impact of the COVID-19 Pandemic on Sexual Behavior and HIV Prevention and Treatment Services among U.S. Men Who Have Sex with Men in the Post-Lockdown Era</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/37081746/">PubMed</a> · <a href="https://doi.org/10.1177/15579883231168602">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2023-04-15-covid-msm-services.html</guid>
  <pubDate>Sat, 15 Apr 2023 00:00:00 GMT</pubDate>
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  <title>New paper: Role of HIV Partner Services in the Modern Biomedical HIV Prevention Era</title>
  <link>https://samueljenness.org/news/2022-10-06-partner-services.html</link>
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<p>New paper in <em>Sexually Transmitted Diseases</em>: <em>The Role of HIV Partner Services in the Modern Biomedical HIV Prevention Era: A Network Modeling Study</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/36194831/">PubMed</a> · <a href="https://doi.org/10.1097/OLQ.0000000000001711">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2022-10-06-partner-services.html</guid>
  <pubDate>Thu, 06 Oct 2022 00:00:00 GMT</pubDate>
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  <title>New paper (Jones): Screening and Treatment for Gonorrhea and Chlamydia on HIV Incidence among MSM</title>
  <link>https://samueljenness.org/news/2022-10-01-screen-treat-sti.html</link>
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<p>New paper led by Jeb Jones in <em>Sexually Transmitted Diseases</em>: <em>Effect of Screening and Treatment for Gonorrhea and Chlamydia on HIV Incidence among Men Who Have Sex with Men in the United States: A Modeling Analysis</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/35921635/">PubMed</a> · <a href="https://doi.org/10.1097/OLQ.0000000000001685">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2022-10-01-screen-treat-sti.html</guid>
  <pubDate>Sat, 01 Oct 2022 00:00:00 GMT</pubDate>
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  <title>New R01 funded: CABARET (Cabotegravir PrEP)</title>
  <link>https://samueljenness.org/news/2022-09-23-cabaret.html</link>
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<p>Received notice of award from NIH/NIAID for a new collaborative project led by PI Julia Marcus at Harvard Medical School: <em>Cabotegravir PrEP: Actionable Robust Evidence for Translation into Practice</em> (<a href="https://reporter.nih.gov/project-details/10618609">R01 AI174862</a>). The study evaluates the real-world use, clinical outcomes, and optimal investment of resources for long-acting injectable PrEP.</p>



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  <category>grant</category>
  <guid>https://samueljenness.org/news/2022-09-23-cabaret.html</guid>
  <pubDate>Fri, 23 Sep 2022 00:00:00 GMT</pubDate>
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  <title>New paper (Chandra): Comparing Sexual Network Mean Active Degree Measurement Metrics</title>
  <link>https://samueljenness.org/news/2022-09-14-mean-active-degree.html</link>
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<p>New paper led by Christina Chandra in <em>Sexually Transmitted Diseases</em>: <em>Comparing Sexual Network Mean Active Degree Measurement Metrics among Men Who Have Sex with Men</em>.</p>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/36112005/">PubMed</a> · <a href="https://doi.org/10.1097/OLQ.0000000000001708">DOI</a></p>



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  <category>paper</category>
  <guid>https://samueljenness.org/news/2022-09-14-mean-active-degree.html</guid>
  <pubDate>Wed, 14 Sep 2022 00:00:00 GMT</pubDate>
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